Contig : dd_Smed_v6_84_0_1 S. mediterranea

Id  dd_Smed_v6_84_0_1 Length  410    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer


GO Displayer


3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001015.1 Homo sapiens ribosomal protein S21 9.0E-26 55-303 249 1
NP_079863.1 Mus musculus ribosomal protein S21 4.0E-25 55-303 249 1
NP_722853.1 Drosophila melanogaster Ribosomal protein S21 3.0E-24 55-303 249 1

2 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01249 PFAM IPR001931 Ribosomal protein S21e 4.3E-33 55-294 240 1
PTHR10442 PANTHER IPR001931 40S RIBOSOMAL PROTEIN S21 7.0E-40 58-300 243 1

1 ORFs

Contig Location Length Strand Sequence
55-318 264 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300167 1.2E-45 1 154.9 0.60243905 57-303 247 1


0 Publications

To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)