Transcript : dd_Smed_v6_84_0_1 S. mediterranea

Length  410     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001015.1 Homo sapiens ribosomal protein S21 9.0E-26 55-303 249 1
NP_079863.1 Mus musculus ribosomal protein S21 4.0E-25 55-303 249 1
NP_722853.1 Drosophila melanogaster Ribosomal protein S21 3.0E-24 55-303 249 1

2 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01249 PFAM IPR001931 Ribosomal protein S21e 4.3E-33 55-294 240 1
PTHR10442 PANTHER IPR001931 40S RIBOSOMAL PROTEIN S21 7.0E-40 58-300 243 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
55-318 264 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300167 1.2E-45 1 154.9 0.60243905 57-303 247 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)