Contig : dd_Smed_v6_84_0_1 S. mediterranea

Id  dd_Smed_v6_84_0_1 Length  410    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001015.1 Homo sapiens ribosomal protein S21 9.0E-26 55-303 249 1
NP_079863.1 Mus musculus ribosomal protein S21 4.0E-25 55-303 249 1
NP_722853.1 Drosophila melanogaster Ribosomal protein S21 3.0E-24 55-303 249 1

2 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01249 PFAM IPR001931 Ribosomal protein S21e 4.3E-33 55-294 240 1
PTHR10442 PANTHER IPR001931 40S RIBOSOMAL PROTEIN S21 7.0E-40 58-300 243 1

1 ORFs

Contig Location Length Strand Sequence
55-318 264 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300167 1.2E-45 1 154.9 0.60243905 57-303 247 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)