Contig : dd_Smed_v6_8491_0_3 S. mediterranea

Id  dd_Smed_v6_8491_0_3 Length  2559    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_659067.2 Mus musculus non-SMC condensin I complex, subunit H 4.0E-36 195-2276 2082 1
NP_001080450.1 Xenopus laevis barren homolog (Drosophila) 7.0E-43 189-2273 2085 1
XP_005091084.1 Aplysia californica condensin complex subunit 2-like 3.0E-42 183-2273 2091 1

2 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF05786 PFAM IPR022816 Condensin complex subunit 2 2.9E-78 180-2270 2091 1
PTHR13108 PANTHER FAMILY NOT NAMED 1.2E-60 123-2285 2163 1

11 ORFs

Contig Location Length Strand Sequence
108-2435 2328 1
1038-1361 324 -1
547-792 246 1
2123-2293 171 -1
1121-1291 171 -1
1804-1956 153 1
1450-1572 123 -1
80-199 120 -1
2245-2358 114 1
983-1087 105 -1
294-395 102 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105678 2.5E-86 3 290.1 0.8233685 168-2274 2107 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)