Transcript : dd_Smed_v6_8491_0_3 S. mediterranea

Length  2559     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_659067.2 Mus musculus non-SMC condensin I complex, subunit H 4.0E-36 195-2276 2082 1
NP_001080450.1 Xenopus laevis barren homolog (Drosophila) 7.0E-43 189-2273 2085 1
XP_005091084.1 Aplysia californica condensin complex subunit 2-like 3.0E-42 183-2273 2091 1

2 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF05786 PFAM IPR022816 Condensin complex subunit 2 2.9E-78 180-2270 2091 1
PTHR13108 PANTHER FAMILY NOT NAMED 1.2E-60 123-2285 2163 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

11 ORFs

Contig Location Length Strand Sequence
108-2435 2328 1
1038-1361 324 -1
547-792 246 1
2123-2293 171 -1
1121-1291 171 -1
1804-1956 153 1
1450-1572 123 -1
80-199 120 -1
2245-2358 114 1
983-1087 105 -1
294-395 102 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105678 2.5E-86 3 290.1 0.8233685 168-2274 2107 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)