Contig : dd_Smed_v6_847_0_1 S. mediterranea

Id  dd_Smed_v6_847_0_1 Length  1878    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006420.1 Homo sapiens chaperonin containing TCP1, subunit 7 (eta) 0.0 134-1711 1578 1
NP_031664.3 Mus musculus chaperonin containing Tcp1, subunit 7 (eta) 0.0 134-1759 1626 1
NP_775355.1 Danio rerio chaperonin containing TCP1, subunit 7 (eta) 0.0 152-1711 1560 1

22 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.260.10 GENE3D IPR027410 GROEL, domain 2 2.7E-38 1250-1339 90 1
PTHR11353 PANTHER IPR002423 CHAPERONIN 3.2E-273 149-1759 1611 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 7.9E-31 302-355 54 1
PF00118 PFAM IPR002423 TCP-1/cpn60 chaperonin family 8.4E-147 230-1699 1470 1
G3DSA:3.50.7.10 GENE3D IPR027409 GroEL 5.1E-53 761-1246 486 1
TIGR02345 TIGRFAMs IPR012720 chap_CCT_eta: T-complex protein 1, eta subunit 9.5E-256 149-1708 1560 1
PS00751 PROSITE IPR002194 Chaperonins TCP-1 signature 2. 0.0 308-355 48 1
SSF48592 SSF IPR002423 GroEL equatorial domain-like 1.44E-83 1343-1699 357 1
G3DSA:1.10.560.10 GENE3D IPR027413 GROEL, domain 1 3.5E-90 1343-1699 357 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 7.9E-31 236-283 48 1
G3DSA:3.30.260.10 GENE3D IPR027410 GROEL, domain 2 2.7E-38 581-757 177 1
SSF52029 SSF IPR027409 GroEL apical domain-like 6.28E-47 755-1261 507 1
SSF54849 SSF GroEL-intermediate domain like 2.17E-28 1232-1339 108 1
PS00995 PROSITE IPR002194 Chaperonins TCP-1 signature 3. 0.0 392-415 24 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 7.9E-31 1247-1312 66 1
PTHR11353:SF22 PANTHER IPR012720 T-COMPLEX PROTEIN 1 SUBUNIT ETA 3.2E-273 149-1759 1611 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 7.9E-31 1349-1384 36 1
G3DSA:1.10.560.10 GENE3D IPR027413 GROEL, domain 1 3.5E-90 146-553 408 1
PS00750 PROSITE IPR002194 Chaperonins TCP-1 signature 1. 0.0 245-280 36 1
SSF48592 SSF IPR002423 GroEL equatorial domain-like 1.44E-83 179-562 384 1
SSF54849 SSF GroEL-intermediate domain like 2.17E-28 584-766 183 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 7.9E-31 392-448 57 1

6 ORFs

Contig Location Length Strand Sequence
134-1765 1632 1
1129-1377 249 -1
1686-1877 192 1
1712-1876 165 -1
1432-1572 141 -1
1026-1145 120 1

7 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105641 0.0 2 1119.7 0.85835993 150-1761 1612 1
TF106333 2.3E-69 2 234.0 0.80085194 207-1710 1504 1
TF106331 3.0E-99 2 332.6 0.7976571 228-1725 1498 1
TF106332 1.8E-75 2 254.2 0.74973375 288-1695 1408 1
TF105638 1.1E-82 2 277.6 0.8120341 189-1713 1525 1
TF105645 9.5E-104 2 347.6 0.83280087 201-1764 1564 1
TF105649 2.4E-106 2 355.9 0.8120341 204-1728 1525 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)