Transcript : dd_Smed_v6_847_0_1 S. mediterranea

Length  1878     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: MF669569.1, chaperonin containing TCP1 subunit 7 mRNA - partial cds
EST: AY067046.1, clone H.97.4d unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006420.1 Homo sapiens chaperonin containing TCP1 subunit 7 0.0 134-1711 1578 1
NP_031664.3 Mus musculus chaperonin containing Tcp1, subunit 7 (eta) 0.0 134-1759 1626 1
NP_775355.1 Danio rerio chaperonin containing TCP1, subunit 7 (eta) 0.0 152-1711 1560 1

22 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.260.10 GENE3D IPR027410 GROEL, domain 2 2.7E-38 1250-1339 90 1
PTHR11353 PANTHER IPR002423 CHAPERONIN 3.2E-273 149-1759 1611 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 7.9E-31 302-355 54 1
PF00118 PFAM IPR002423 TCP-1/cpn60 chaperonin family 8.4E-147 230-1699 1470 1
G3DSA:3.50.7.10 GENE3D IPR027409 GroEL 5.1E-53 761-1246 486 1
TIGR02345 TIGRFAMs IPR012720 chap_CCT_eta: T-complex protein 1, eta subunit 9.5E-256 149-1708 1560 1
PS00751 PROSITE IPR002194 Chaperonins TCP-1 signature 2. 0.0 308-355 48 1
SSF48592 SSF IPR002423 GroEL equatorial domain-like 1.44E-83 1343-1699 357 1
G3DSA:1.10.560.10 GENE3D IPR027413 GROEL, domain 1 3.5E-90 1343-1699 357 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 7.9E-31 236-283 48 1
G3DSA:3.30.260.10 GENE3D IPR027410 GROEL, domain 2 2.7E-38 581-757 177 1
SSF52029 SSF IPR027409 GroEL apical domain-like 6.28E-47 755-1261 507 1
SSF54849 SSF GroEL-intermediate domain like 2.17E-28 1232-1339 108 1
PS00995 PROSITE IPR002194 Chaperonins TCP-1 signature 3. 0.0 392-415 24 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 7.9E-31 1247-1312 66 1
PTHR11353:SF22 PANTHER IPR012720 T-COMPLEX PROTEIN 1 SUBUNIT ETA 3.2E-273 149-1759 1611 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 7.9E-31 1349-1384 36 1
G3DSA:1.10.560.10 GENE3D IPR027413 GROEL, domain 1 3.5E-90 146-553 408 1
PS00750 PROSITE IPR002194 Chaperonins TCP-1 signature 1. 0.0 245-280 36 1
SSF48592 SSF IPR002423 GroEL equatorial domain-like 1.44E-83 179-562 384 1
SSF54849 SSF GroEL-intermediate domain like 2.17E-28 584-766 183 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 7.9E-31 392-448 57 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
134-1765 1632 1
1129-1377 249 -1
1686-1877 192 1
1712-1876 165 -1
1432-1572 141 -1
1026-1145 120 1

7 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105641 0.0 2 1119.7 0.85835993 150-1761 1612 1
TF106333 2.3E-69 2 234.0 0.80085194 207-1710 1504 1
TF106331 3.0E-99 2 332.6 0.7976571 228-1725 1498 1
TF106332 1.8E-75 2 254.2 0.74973375 288-1695 1408 1
TF105638 1.1E-82 2 277.6 0.8120341 189-1713 1525 1
TF105645 9.5E-104 2 347.6 0.83280087 201-1764 1564 1
TF105649 2.4E-106 2 355.9 0.8120341 204-1728 1525 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)