Contig : dd_Smed_v6_8425_0_1 S. mediterranea

Id  dd_Smed_v6_8425_0_1 Length  7019    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_055061.1 Homo sapiens cadherin, EGF LAG seven-pass G-type receptor 1 2.0E-35 5670-6560 891 1
XP_004415888.1 Odobenus rosmarus divergens cadherin, EGF LAG seven-pass G-type receptor 1 1.0E-38 5670-6560 891 1
XP_007892498.1 Callorhinchus milii cadherin, EGF LAG seven-pass G-type receptor 2 8.0E-38 5670-6569 900 1

16 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF03128 PFAM IPR004153 CXCXC repeat 0.021 1201-1218 18 1
PS50221 PROFILE IPR000203 GPS domain profile. 11.644 5655-5816 162 1
SM00303 SMART IPR000203 G-protein-coupled receptor proteolytic site domain 0.0064 5652-5816 165 1
SSF49899 SSF IPR008985 Concanavalin A-like lectins/glucanases 2.18E-9 1545-1973 429 1
SSF49899 SSF IPR008985 Concanavalin A-like lectins/glucanases 1.01E-9 4236-4700 465 1
PF00002 PFAM IPR000832 7 transmembrane receptor (Secretin family) 7.1E-33 5835-6521 687 1
PS50261 PROFILE IPR017981 G-protein coupled receptors family 2 profile 2. 24.402 5841-6545 705 1
PF01825 PFAM IPR000203 Latrophilin/CL-1-like GPS domain 9.7E-6 5667-5801 135 1
SSF49899 SSF IPR008985 Concanavalin A-like lectins/glucanases 1.95E-6 3054-3497 444 1
PR00249 PRINTS IPR000832 Secretin-like GPCR superfamily signature 3.9E-9 6144-6218 75 1
PR00249 PRINTS IPR000832 Secretin-like GPCR superfamily signature 3.9E-9 6036-6104 69 1
PR00249 PRINTS IPR000832 Secretin-like GPCR superfamily signature 3.9E-9 5847-5918 72 1
PR00249 PRINTS IPR000832 Secretin-like GPCR superfamily signature 3.9E-9 6480-6542 63 1
PR00249 PRINTS IPR000832 Secretin-like GPCR superfamily signature 3.9E-9 5943-6014 72 1
PTHR12011 PANTHER G-PROTEIN COUPLED RECEPTOR 2.4E-60 30-6575 6546 1
SSF81321 SSF Family A G protein-coupled receptor-like 2.01E-6 5745-6587 843 1

18 ORFs

Contig Location Length Strand Sequence
180-6908 6729 1
4436-4690 255 -1
6224-6430 207 -1
2861-3064 204 1
3328-3531 204 1
6814-6993 180 1
4955-5128 174 -1
1481-1654 174 -1
859-1026 168 -1
4223-4357 135 -1
3209-3337 129 -1
47-175 129 -1
2616-2741 126 -1
3058-3177 120 1
2449-2565 117 1
811-924 114 1
3586-3696 111 -1
6269-6376 108 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)