Contig : dd_Smed_v6_83_0_3 S. mediterranea

Id  dd_Smed_v6_83_0_3 Length  1644    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006079.1 Homo sapiens tubulin, beta 4B class IVb 0.0 210-1490 1281 1
NP_076205.1 Mus musculus tubulin, beta 2B class IIB 0.0 210-1499 1290 1
NP_954525.1 Rattus norvegicus tubulin, beta 4B class IVb 0.0 210-1490 1281 1

34 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00091 PFAM IPR003008 Tubulin/FtsZ family, GTPase domain 6.6E-71 216-872 657 1
SSF52490 SSF IPR003008 Tubulin nucleotide-binding domain-like 1.57E-102 210-935 726 1
PTHR11588:SF54 PANTHER SUBFAMILY NOT NAMED 0.0 210-1523 1314 1
PS00227 PROSITE IPR017975 Tubulin subunits alpha, beta, and gamma signature. 0.0 627-644 18 1
G3DSA:3.40.50.1440 GENE3D IPR003008   1.2E-151 210-995 786 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 8.6E-124 1140-1193 54 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 8.6E-124 330-380 51 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 8.6E-124 531-584 54 1
SSF55307 SSF IPR008280 Tubulin C-terminal domain-like 1.92E-84 939-1493 555 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 8.6E-124 843-878 36 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 8.6E-124 897-923 27 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 8.6E-124 942-980 39 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 8.6E-124 1194-1235 42 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 8.6E-124 1338-1370 33 1
PF03953 PFAM IPR018316 Tubulin C-terminal domain 3.3E-50 990-1352 363 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 8.6E-124 471-503 33 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 8.6E-124 1443-1496 54 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 8.6E-124 1248-1316 69 1
PR01161 PRINTS IPR000217 Tubulin signature 1.8E-105 486-518 33 1
PR01161 PRINTS IPR000217 Tubulin signature 1.8E-105 1317-1400 84 1
PR01161 PRINTS IPR000217 Tubulin signature 1.8E-105 735-773 39 1
PR01161 PRINTS IPR000217 Tubulin signature 1.8E-105 603-656 54 1
PR01161 PRINTS IPR000217 Tubulin signature 1.8E-105 525-596 72 1
PR01161 PRINTS IPR000217 Tubulin signature 1.8E-105 777-836 60 1
G3DSA:3.30.1330.20 GENE3D IPR018316   3.4E-55 999-1325 327 1
PTHR11588 PANTHER IPR000217 TUBULIN 0.0 210-1523 1314 1
SM00864 SMART IPR003008 Tubulin/FtsZ family, GTPase domain 2.4E-71 348-938 591 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 8.6E-124 663-698 36 1
PR01161 PRINTS IPR000217 Tubulin signature 1.8E-105 660-722 63 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 8.6E-124 1002-1049 48 1

6 ORFs

Contig Location Length Strand Sequence
210-1538 1329 1
1334-1546 213 -1
466-624 159 -1
286-411 126 1
771-890 120 -1
1435-1539 105 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330882 2.5E-90 3 302.9 0.7779805 210-1488 1279 1
TF300477 4.3E-107 3 358.1 0.77068126 213-1479 1267 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)