Transcript : dd_Smed_v6_839_0_1 S. mediterranea

Length  1143     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067214.1, clone HB.14.10b unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_733433.1 Drosophila melanogaster Ribosomal protein L6 5.0E-49 482-1069 588 1
NP_035420.2 Mus musculus ribosomal protein L6 2.0E-47 467-1069 603 1
XP_005253977.1 Homo sapiens ribosomal protein L6 8.0E-47 533-1069 537 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 230-265 36 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 7.233 326-397 72 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 12.979 191-295 105 1
SSF47473 SSF EF-hand 1.78E-13 152-439 288 1
PF01159 PFAM IPR000915 Ribosomal protein L6e 1.2E-34 731-1066 336 1
PTHR10715 PANTHER IPR000915 60S RIBOSOMAL PROTEIN L6 1.2E-86 524-1066 543 1
PF13499 PFAM IPR011992 EF-hand domain pair 6.0E-10 209-370 162 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 6.6E-13 182-439 258 1
SSF50104 SSF IPR008991 Translation proteins SH3-like domain 3.61E-20 614-841 228 1
G3DSA:2.30.30.30 GENE3D IPR014722   1.9E-25 614-862 249 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 0.0065 203-286 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 9.2 305-388 84 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
197-1069 873 1
872-1057 186 -1
661-798 138 -1
2-118 117 -1
164-274 111 -1
915-1016 102 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351232 5.1E-27 2 93.7 0.4864392 198-753 556 1
TF300115 1.6E-82 2 277.3 0.4785652 522-1068 547 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)