Contig : dd_Smed_v6_838_0_1 S. mediterranea

Id  dd_Smed_v6_838_0_1 Length  1041    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001191860.1 Mus musculus receptor accessory protein 6 7.0E-47 109-621 513 1
NP_612402.1 Homo sapiens receptor accessory protein 6 5.0E-46 109-642 534 1
XP_005098408.1 Aplysia californica receptor expression-enhancing protein 5-like 4.0E-56 94-633 540 1

2 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF03134 PFAM IPR004345 TB2/DP1, HVA22 family 2.0E-33 259-537 279 1
PTHR12300 PANTHER IPR004345 HVA22-LIKE PROTEINS 2.2E-75 124-573 450 1

3 ORFs

Contig Location Length Strand Sequence
100-645 546 1
360-515 156 1
714-818 105 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314913 4.8E-108 1 361.7 0.47646493 120-615 496 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)