Transcript : dd_Smed_v6_838_0_1 S. mediterranea

Length  1041     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001191860.1 Mus musculus receptor accessory protein 6 7.0E-47 109-621 513 1
NP_612402.1 Homo sapiens receptor accessory protein 6 5.0E-46 109-642 534 1
XP_005098408.1 Aplysia californica receptor expression-enhancing protein 5-like 4.0E-56 94-633 540 1

2 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF03134 PFAM IPR004345 TB2/DP1, HVA22 family 2.0E-33 259-537 279 1
PTHR12300 PANTHER IPR004345 HVA22-LIKE PROTEINS 2.2E-75 124-573 450 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
100-645 546 1
360-515 156 1
714-818 105 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314913 4.8E-108 1 361.7 0.47646493 120-615 496 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)