Contig : dd_Smed_v6_8376_0_1 S. mediterranea

Id  dd_Smed_v6_8376_0_1 Length  2699    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001156869.1 Mus musculus ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 5.0E-73 355-882 528 1
NP_001138246.1 Homo sapiens ELAV like neuron-specific RNA binding protein 4 7.0E-73 355-882 528 1
XP_005425382.1 Geospiza fortis ELAV-like protein 2-like 5.0E-74 370-882 513 1

23 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 16.688 637-876 240 1
G3DSA:3.30.70.330 GENE3D IPR012677   1.7E-26 292-621 330 1
G3DSA:3.30.70.330 GENE3D IPR012677   1.2E-24 1390-1635 246 1
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 15.92 1402-1635 234 1
PTHR24011 PANTHER FAMILY NOT NAMED 2.2E-127 97-1626 1530 1
G3DSA:3.30.70.330 GENE3D IPR012677   1.2E-21 625-876 252 1
SSF54928 SSF RNA-binding domain, RBD 4.3E-23 1366-1644 279 1
SSF54928 SSF RNA-binding domain, RBD 2.37E-42 373-828 456 1
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.9E-17 1408-1614 207 1
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.2E-17 385-594 210 1
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.3E-18 643-834 192 1
PR00961 PRINTS IPR002343 Paraneoplastic encephalomyelitis antigen family signature 2.87E-43 379-423 45 1
SM00360 SMART IPR000504 RNA recognition motif 1.2E-19 640-864 225 1
SM00360 SMART IPR000504 RNA recognition motif 8.5E-21 382-600 219 1
SM00360 SMART IPR000504 RNA recognition motif 4.1E-20 1405-1623 219 1
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 18.001 379-612 234 1
PR00961 PRINTS IPR002343 Paraneoplastic encephalomyelitis antigen family signature 2.87E-43 550-594 45 1
TIGR01661 TIGRFAMs IPR006548 ELAV_HUD_SF: ELAV/HuD family splicing factor 1.1E-124 370-1635 1266 1
PTHR24011:SF199 PANTHER ELAV-LIKE PROTEIN 2 2.2E-127 97-1626 1530 1
PR00961 PRINTS IPR002343 Paraneoplastic encephalomyelitis antigen family signature 2.87E-43 820-870 51 1
PR00961 PRINTS IPR002343 Paraneoplastic encephalomyelitis antigen family signature 2.87E-43 697-732 36 1
PR00961 PRINTS IPR002343 Paraneoplastic encephalomyelitis antigen family signature 2.87E-43 598-648 51 1
PR00961 PRINTS IPR002343 Paraneoplastic encephalomyelitis antigen family signature 2.87E-43 652-696 45 1

12 ORFs

Contig Location Length Strand Sequence
1-1686 1686 1
831-1004 174 -1
3-173 171 -1
2396-2563 168 1
1070-1228 159 1
212-361 150 1
1867-1998 132 -1
648-776 129 -1
1887-2012 126 1
2022-2135 114 -1
528-629 102 -1
173-274 102 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313377 1.1E-158 1 530.3 0.46165246 378-1623 1246 1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)