Transcript : dd_Smed_v6_8376_0_1 S. mediterranea

Length  2699     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001156869.1 Mus musculus ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 5.0E-73 355-882 528 1
NP_001138246.1 Homo sapiens ELAV like neuron-specific RNA binding protein 4 7.0E-73 355-882 528 1
XP_005425382.1 Geospiza fortis ELAV-like protein 2-like 5.0E-74 370-882 513 1

23 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 16.688 637-876 240 1
G3DSA:3.30.70.330 GENE3D IPR012677   1.7E-26 292-621 330 1
G3DSA:3.30.70.330 GENE3D IPR012677   1.2E-24 1390-1635 246 1
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 15.92 1402-1635 234 1
PTHR24011 PANTHER FAMILY NOT NAMED 2.2E-127 97-1626 1530 1
G3DSA:3.30.70.330 GENE3D IPR012677   1.2E-21 625-876 252 1
SSF54928 SSF RNA-binding domain, RBD 4.3E-23 1366-1644 279 1
SSF54928 SSF RNA-binding domain, RBD 2.37E-42 373-828 456 1
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.9E-17 1408-1614 207 1
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.2E-17 385-594 210 1
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.3E-18 643-834 192 1
PR00961 PRINTS IPR002343 Paraneoplastic encephalomyelitis antigen family signature 2.87E-43 379-423 45 1
SM00360 SMART IPR000504 RNA recognition motif 1.2E-19 640-864 225 1
SM00360 SMART IPR000504 RNA recognition motif 8.5E-21 382-600 219 1
SM00360 SMART IPR000504 RNA recognition motif 4.1E-20 1405-1623 219 1
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 18.001 379-612 234 1
PR00961 PRINTS IPR002343 Paraneoplastic encephalomyelitis antigen family signature 2.87E-43 550-594 45 1
TIGR01661 TIGRFAMs IPR006548 ELAV_HUD_SF: ELAV/HuD family splicing factor 1.1E-124 370-1635 1266 1
PTHR24011:SF199 PANTHER ELAV-LIKE PROTEIN 2 2.2E-127 97-1626 1530 1
PR00961 PRINTS IPR002343 Paraneoplastic encephalomyelitis antigen family signature 2.87E-43 820-870 51 1
PR00961 PRINTS IPR002343 Paraneoplastic encephalomyelitis antigen family signature 2.87E-43 697-732 36 1
PR00961 PRINTS IPR002343 Paraneoplastic encephalomyelitis antigen family signature 2.87E-43 598-648 51 1
PR00961 PRINTS IPR002343 Paraneoplastic encephalomyelitis antigen family signature 2.87E-43 652-696 45 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

12 ORFs

Contig Location Length Strand Sequence
1-1686 1686 1
831-1004 174 -1
3-173 171 -1
2396-2563 168 1
1070-1228 159 1
212-361 150 1
1867-1998 132 -1
648-776 129 -1
1887-2012 126 1
2022-2135 114 -1
528-629 102 -1
173-274 102 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313377 1.1E-158 1 530.3 0.46165246 378-1623 1246 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)