Contig : dd_Smed_v6_82_0_1 S. mediterranea

Id  dd_Smed_v6_82_0_1 Length  928    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_729871.1 Drosophila melanogaster Ribosomal protein S4 7.0E-119 87-863 777 1
NP_000999.1 Homo sapiens ribosomal protein S4, Y-linked 1 9.0E-116 87-866 780 1
XP_004526806.1 Ceratitis capitata 40S ribosomal protein S4-like 1.0E-120 87-863 777 1

8 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00467 PFAM IPR005824 KOW motif 1.2E-4 618-713 96 1
PF01479 PFAM IPR002942 S4 domain 1.0E-5 225-353 129 1
SM00739 SMART IPR005824 KOW (Kyprides, Ouzounis, Woese) motif. 0.0057 606-686 81 1
PF00900 PFAM IPR013845 Ribosomal family S4e 1.1E-26 369-593 225 1
PS00528 PROSITE IPR018199 Ribosomal protein S4e signature. 0.0 108-149 42 1
PF08071 PFAM IPR013843 RS4NT (NUC023) domain 5.2E-17 93-194 102 1
PS50889 PROFILE IPR002942 S4 RNA-binding domain profile. 9.569 210-425 216 1
PTHR11581 PANTHER IPR000876 30S/40S RIBOSOMAL PROTEIN S4 7.0E-167 90-872 783 1

3 ORFs

Contig Location Length Strand Sequence
87-875 789 1
456-713 258 -1
349-501 153 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300612 9.3E-115 3 381.7 0.77693963 144-864 721 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)