Contig : dd_Smed_v6_8233_0_1 S. mediterranea

Id  dd_Smed_v6_8233_0_1 Length  2736    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006510006.1 Mus musculus glutamate receptor, ionotropic, kainate 4 5.0E-5 1127-2281 1155 1
XP_005988151.1 Latimeria chalumnae glutamate receptor, ionotropic, kainate 4 8.0E-6 1127-2281 1155 1
XP_007422942.1 Python bivittatus glutamate receptor, ionotropic, kainate 4 8.0E-6 1127-2281 1155 1

8 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR18966 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2.2E-20 299-2311 2013 1
G3DSA:1.10.287.70 GENE3D   5.4E-14 1424-1861 438 1
PR00177 PRINTS IPR001508 NMDA receptor signature 2.9E-6 1661-1741 81 1
SSF53850 SSF Periplasmic binding protein-like II 9.46E-10 1724-2143 420 1
PR00177 PRINTS IPR001508 NMDA receptor signature 2.9E-6 1445-1519 75 1
PR00177 PRINTS IPR001508 NMDA receptor signature 2.9E-6 2210-2281 72 1
SSF53850 SSF Periplasmic binding protein-like II 9.46E-10 1124-1393 270 1
PF00060 PFAM IPR001320 Ligand-gated ion channel 9.3E-16 1445-2242 798 1

8 ORFs

Contig Location Length Strand Sequence
2-2602 2601 1
1330-1614 285 -1
2537-2683 147 -1
1677-1808 132 1
1099-1230 132 -1
1795-1914 120 -1
2631-2735 105 -1
573-677 105 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF334668 6.2E-17 2 61.0 0.4236111 1149-2307 1159 1
TF352434 1.4E-20 2 73.6 0.4005848 1257-2352 1096 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)