Transcript : dd_Smed_v6_8233_0_1 S. mediterranea

Length  2736     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006510006.1 Mus musculus glutamate receptor, ionotropic, kainate 4 5.0E-5 1127-2281 1155 1
XP_005988151.1 Latimeria chalumnae glutamate receptor, ionotropic, kainate 4 8.0E-6 1127-2281 1155 1
XP_007422942.1 Python bivittatus glutamate receptor, ionotropic, kainate 4 8.0E-6 1127-2281 1155 1

8 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR18966 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2.2E-20 299-2311 2013 1
G3DSA:1.10.287.70 GENE3D   5.4E-14 1424-1861 438 1
PR00177 PRINTS IPR001508 NMDA receptor signature 2.9E-6 1661-1741 81 1
SSF53850 SSF Periplasmic binding protein-like II 9.46E-10 1724-2143 420 1
PR00177 PRINTS IPR001508 NMDA receptor signature 2.9E-6 1445-1519 75 1
PR00177 PRINTS IPR001508 NMDA receptor signature 2.9E-6 2210-2281 72 1
SSF53850 SSF Periplasmic binding protein-like II 9.46E-10 1124-1393 270 1
PF00060 PFAM IPR001320 Ligand-gated ion channel 9.3E-16 1445-2242 798 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

8 ORFs

Contig Location Length Strand Sequence
2-2602 2601 1
1330-1614 285 -1
2537-2683 147 -1
1677-1808 132 1
1099-1230 132 -1
1795-1914 120 -1
2631-2735 105 -1
573-677 105 -1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF334668 6.2E-17 2 61.0 0.4236111 1149-2307 1159 1
TF352434 1.4E-20 2 73.6 0.4005848 1257-2352 1096 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)