Transcript : dd_Smed_v6_8051_0_1 S. mediterranea

Length  1311     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY066312.1, clone D15Contig unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005091029.1 Aplysia californica protein TBATA-like 1.0E-18 177-833 657 1
XP_002121615.1 Ciona intestinalis protein TBATA 6.0E-16 174-824 651 1
XP_789620.2 Strongylocentrotus purpuratus protein TBATA 4.0E-14 174-833 660 1

2 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF15256 PFAM SPATIAL 1.8E-11 174-470 297 1
PF15256 PFAM SPATIAL 1.0E-8 690-821 132 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
3-1193 1191 1
66-242 177 -1
224-397 174 -1
1025-1168 144 -1
205-318 114 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)