Transcript : dd_Smed_v6_803_0_1 S. mediterranea

Length  975     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_291024.1 Homo sapiens myosin light chain 12B 3.0E-57 339-806 468 1
NP_001267760.1 Aplysia californica myosin regulatory light chain (N-terminus) 7.0E-70 339-806 468 1
XP_783666.1 Strongylocentrotus purpuratus myosin regulatory light polypeptide 9-like 2.0E-65 339-806 468 1

11 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 10.943 591-695 105 1
PF13405 PFAM IPR002048 EF-hand domain 0.0057 606-686 81 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 8.7E-23 381-566 186 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 1.1E-15 588-779 192 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 3.3E-6 396-479 84 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 423-458 36 1
PTHR23049 PANTHER MYOSIN REGULATORY LIGHT CHAIN 2 7.9E-90 318-803 486 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 14.82 384-488 105 1
SSF47473 SSF EF-hand 2.07E-40 375-782 408 1
PF00036 PFAM IPR002048 EF hand 8.4E-8 396-479 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 0.49 603-686 84 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
306-806 501 1
583-885 303 1
383-667 285 -1
744-911 168 -1
144-299 156 -1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF334804 1.2E-16 3 60.0 0.41641027 381-786 406 1
TF327112 0.0015 3 16.5 0.40717947 381-777 397 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)