Contig : dd_Smed_v6_803_0_1 S. mediterranea

Id  dd_Smed_v6_803_0_1 Length  975    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_291024.1 Homo sapiens myosin, light chain 12B, regulatory 3.0E-57 339-806 468 1
NP_001267760.1 Aplysia californica myosin regulatory light chain (N-terminus) 7.0E-70 339-806 468 1
XP_783666.1 Strongylocentrotus purpuratus myosin regulatory light polypeptide 9-like 2.0E-65 339-806 468 1

11 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 10.943 591-695 105 1
PF13405 PFAM IPR002048 EF-hand domain 0.0057 606-686 81 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 8.7E-23 381-566 186 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 1.1E-15 588-779 192 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 3.3E-6 396-479 84 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 423-458 36 1
PTHR23049 PANTHER MYOSIN REGULATORY LIGHT CHAIN 2 7.9E-90 318-803 486 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 14.82 384-488 105 1
SSF47473 SSF EF-hand 2.07E-40 375-782 408 1
PF00036 PFAM IPR002048 EF hand 8.4E-8 396-479 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 0.49 603-686 84 1

5 ORFs

Contig Location Length Strand Sequence
306-806 501 1
583-885 303 1
383-667 285 -1
744-911 168 -1
144-299 156 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF334804 1.2E-16 3 60.0 0.41641027 381-786 406 1
TF327112 0.0015 3 16.5 0.40717947 381-777 397 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)