Contig : dd_Smed_v6_8019_0_1 S. mediterranea

Id  dd_Smed_v6_8019_0_1 Length  2255    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003147443.1 Loa loa INX-1 protein 2.0E-65 226-1470 1245 1
XP_001899551.1 Brugia malayi Innexin unc-7 4.0E-65 226-1470 1245 1
NP_001191578.1 Aplysia californica pannexin 3 2.0E-63 166-1398 1233 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS51013 PROFILE IPR000990 Pannexin family profile. 30.441 211-1350 1140 1
PTHR11893:SF0 PANTHER PROTEIN INX-15 1.5E-175 163-1548 1386 1
PTHR11893 PANTHER IPR000990 INNEXIN 1.5E-175 163-1548 1386 1
PF00876 PFAM IPR000990 Innexin 9.4E-99 226-1338 1113 1
PR01262 PRINTS IPR000990 Innexin signature 5.11E-29 379-405 27 1
PR01262 PRINTS IPR000990 Innexin signature 5.11E-29 793-834 42 1
PR01262 PRINTS IPR000990 Innexin signature 5.11E-29 943-969 27 1
PR01262 PRINTS IPR000990 Innexin signature 5.11E-29 295-327 33 1
PR01262 PRINTS IPR000990 Innexin signature 5.11E-29 475-540 66 1
PR01262 PRINTS IPR000990 Innexin signature 5.11E-29 1015-1062 48 1

5 ORFs

Contig Location Length Strand Sequence
163-1554 1392 1
1370-1561 192 1
538-687 150 -1
1096-1233 138 -1
1963-2070 108 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)