Transcript : dd_Smed_v6_78_0_1 S. mediterranea
Length  1256     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY068133.1, clone H.8.10b unknown mRNA sequence
AY067285.1, clone HB.14.5c unknown mRNA sequence
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Lists
This Contig is in 2 lists:
All contigs for Schmidtea mediterranea (241406)
All contigs in dd_Smed (41745)

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Sequence Features

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3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_002037.2 Homo sapiens glyceraldehyde-3-phosphate dehydrogenase 1.0E-178 119-1126 1008 1
NP_032110.1 Mus musculus glyceraldehyde-3-phosphate dehydrogenase 3.0E-177 131-1126 996 1
NP_001166422.1 Cavia porcellus glyceraldehyde-3-phosphate dehydrogenase 0.0 131-1126 996 1

16 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF111304 SSF IPR023627 Recombination protein RecR 6.67E-5 628-744 117 1
PF02800 PFAM IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 9.1E-74 590-1060 471 1
PTHR10836 PANTHER IPR020831 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 5.2E-263 125-1126 1002 1
G3DSA:3.40.50.720 GENE3D IPR016040 NAD(P)-binding Rossmann-like Domain 2.0E-77 131-598 468 1
PR00078 PRINTS IPR020831 Glyceraldehyde-3-phosphate dehydrogenase signature 3.3E-43 557-610 54 1
PR00078 PRINTS IPR020831 Glyceraldehyde-3-phosphate dehydrogenase signature 3.3E-43 452-490 39 1
PR00078 PRINTS IPR020831 Glyceraldehyde-3-phosphate dehydrogenase signature 3.3E-43 638-685 48 1
SM00846 SMART IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4.4E-84 128-574 447 1
PF00044 PFAM IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 1.1E-55 131-574 444 1
PS00071 PROSITE IPR020830 Glyceraldehyde 3-phosphate dehydrogenase active site. 0.0 569-589 21 1
G3DSA:3.30.360.10 GENE3D Dihydrodipicolinate Reductase; domain 2 2.5E-85 602-1066 465 1
TIGR01534 TIGRFAMs IPR006424 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 3.2E-131 131-1096 966 1
PR00078 PRINTS IPR020831 Glyceraldehyde-3-phosphate dehydrogenase signature 3.3E-43 809-859 51 1
SSF51735 SSF NAD(P)-binding Rossmann-fold domains 8.33E-68 131-637 507 1
SSF55347 SSF Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 2.32E-81 572-1060 489 1
PR00078 PRINTS IPR020831 Glyceraldehyde-3-phosphate dehydrogenase signature 3.3E-43 929-973 45 1

Genomics

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4 ORFs

Contig Location Length Strand Sequence
119-1129 1011 1
400-654 255 -1
657-770 114 1
1-102 102 1

0 Treefam Sequence Features

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)