Contig : dd_Smed_v6_7781_0_4 S. mediterranea

Id  dd_Smed_v6_7781_0_4 Length  775    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_035693.3 Mus musculus peroxiredoxin 2 9.0E-92 131-694 564 1
NP_002565.1 Homo sapiens peroxiredoxin 1 1.0E-90 137-694 558 1
XP_006631553.1 Lepisosteus oculatus peroxiredoxin-1-like 4.0E-96 137-694 558 1

7 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS51352 PROFILE IPR012336 Thioredoxin domain profile. 16.764 128-601 474 1
PF10417 PFAM IPR019479 C-terminal domain of 1-Cys peroxiredoxin 1.5E-13 593-694 102 1
G3DSA:3.40.30.10 GENE3D IPR012336 Glutaredoxin 3.5E-80 128-697 570 1
PTHR10681:SF101 PANTHER PEROXIREDOXIN-4 3.0E-116 146-691 546 1
PTHR10681 PANTHER THIOREDOXIN PEROXIDASE 3.0E-116 146-691 546 1
PF00578 PFAM IPR000866 AhpC/TSA family 5.1E-37 137-529 393 1
SSF52833 SSF IPR012336 Thioredoxin-like 1.32E-68 125-694 570 1

1 ORFs

Contig Location Length Strand Sequence
101-703 603 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105183 2.3E-24 2 84.8 0.69419354 138-675 538 1
TF105181 3.8E-133 2 443.9 0.72129035 141-699 559 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)