Contig : dd_Smed_v6_7781_0_2 S. mediterranea

Id  dd_Smed_v6_7781_0_2 Length  818    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_035693.3 Mus musculus peroxiredoxin 2 3.0E-91 174-737 564 1
NP_002565.1 Homo sapiens peroxiredoxin 1 2.0E-90 180-737 558 1
XP_006631553.1 Lepisosteus oculatus peroxiredoxin-1-like 9.0E-96 180-737 558 1

7 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF10417 PFAM IPR019479 C-terminal domain of 1-Cys peroxiredoxin 1.2E-13 636-737 102 1
PTHR10681 PANTHER THIOREDOXIN PEROXIDASE 3.0E-116 189-734 546 1
SSF52833 SSF IPR012336 Thioredoxin-like 7.74E-69 168-737 570 1
PS51352 PROFILE IPR012336 Thioredoxin domain profile. 16.764 171-644 474 1
PTHR10681:SF101 PANTHER PEROXIREDOXIN-4 3.0E-116 189-734 546 1
PF00578 PFAM IPR000866 AhpC/TSA family 3.4E-37 180-572 393 1
G3DSA:3.40.30.10 GENE3D IPR012336 Glutaredoxin 2.1E-80 171-740 570 1

1 ORFs

Contig Location Length Strand Sequence
165-746 582 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105183 2.7E-24 3 84.6 0.65770173 180-717 538 1
TF105181 4.4E-133 3 443.7 0.6833741 183-741 559 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)