Transcript : dd_Smed_v6_766_0_1 S. mediterranea

Length  685     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_611544.1 Drosophila melanogaster CG10527 gene product from transcript CG10527-RA 5.0E-19 197-577 381 1
XP_002082422.1 Drosophila simulans GD25227 gene product from transcript GD25227-RA 1.0E-19 197-577 381 1
XP_005178844.1 Musca domestica C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8 1.0E-19 194-607 414 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR31649 PANTHER FAMILY NOT NAMED 1.0E-35 89-604 516 1
PF11901 PFAM IPR024518 Protein of unknown function (DUF3421) 3.2E-29 251-580 330 1
SM00696 SMART IPR006616 Repeats found in Drosophila proteins. 2.8E-5 188-382 195 1
SM00696 SMART IPR006616 Repeats found in Drosophila proteins. 2.5E-18 404-610 207 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
146-625 480 1
212-580 369 -1
360-554 195 -1
543-674 132 1
367-489 123 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)