Contig : dd_Smed_v6_766_0_1 S. mediterranea

Id  dd_Smed_v6_766_0_1 Length  685    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_611544.1 Drosophila melanogaster CG10527 gene product from transcript CG10527-RA 5.0E-19 197-577 381 1
XP_002082422.1 Drosophila simulans GD25227 gene product from transcript GD25227-RA 1.0E-19 197-577 381 1
XP_005178844.1 Musca domestica C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8-like 1.0E-19 194-607 414 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR31649 PANTHER FAMILY NOT NAMED 1.0E-35 89-604 516 1
PF11901 PFAM IPR024518 Protein of unknown function (DUF3421) 3.2E-29 251-580 330 1
SM00696 SMART IPR006616 Repeats found in Drosophila proteins. 2.8E-5 188-382 195 1
SM00696 SMART IPR006616 Repeats found in Drosophila proteins. 2.5E-18 404-610 207 1

5 ORFs

Contig Location Length Strand Sequence
146-625 480 1
212-580 369 -1
360-554 195 -1
543-674 132 1
367-489 123 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)