Contig : dd_Smed_v6_7638_0_1 S. mediterranea

Id  dd_Smed_v6_7638_0_1 Length  15054    Open in Genome Browser

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Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005236.2 Homo sapiens FAT atypical cadherin 1 0.0 196-13617 13422 1
NP_649171.3 Drosophila melanogaster kugelei 0.0 370-13698 13329 1
NP_114007.1 Rattus norvegicus FAT atypical cadherin 1 0.0 1579-13617 12039 1

188 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00232 PROSITE IPR020894 Cadherin domain signature. 0.0 9787-9816 30 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 8.928 4072-4383 312 1
PS00022 PROSITE IPR013032 EGF-like domain signature 1. 0.0 12295-12327 33 1
PS00022 PROSITE IPR013032 EGF-like domain signature 1. 0.0 13579-13611 33 1
SSF49313 SSF IPR015919 Cadherin-like 2.88E-18 2689-2994 306 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 15.088 6874-7191 318 1
SSF49313 SSF IPR015919 Cadherin-like 2.43E-26 10714-11127 414 1
SSF49313 SSF IPR015919 Cadherin-like 4.0E-12 6220-6603 384 1
SSF49313 SSF IPR015919 Cadherin-like 3.43E-12 7810-8097 288 1
SSF49313 SSF IPR015919 Cadherin-like 1.06E-10 1879-2229 351 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 20.108 5917-6255 339 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 19.1 9166-9477 312 1
SSF49313 SSF IPR015919 Cadherin-like 3.71E-15 6835-7167 333 1
SM00179 SMART IPR001881 Calcium-binding EGF-like domain 8.5E-9 13498-13614 117 1
SM00179 SMART IPR001881 Calcium-binding EGF-like domain 1.2 13132-13245 114 1
SM00179 SMART IPR001881 Calcium-binding EGF-like domain 9.2E-4 13264-13359 96 1
SSF49899 SSF IPR008985 Concanavalin A-like lectins/glucanases 3.01E-13 12295-12348 54 1
SSF49899 SSF IPR008985 Concanavalin A-like lectins/glucanases 3.01E-13 12532-13104 573 1
SSF49313 SSF IPR015919 Cadherin-like 2.28E-7 5554-5892 339 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 23.594 10753-11106 354 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 17.192 1618-1914 297 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 26.093 10444-10749 306 1
SSF49313 SSF IPR015919 Cadherin-like 2.0E-17 2983-3339 357 1
SSF57196 SSF EGF/Laminin 1.37E-5 13129-13263 135 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 12.391 6619-6870 252 1
SSF49313 SSF IPR015919 Cadherin-like 6.28E-21 3613-4005 393 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 15.702 5284-5559 276 1
G3DSA:2.10.25.10 GENE3D Laminin 1.5E-8 13483-13620 138 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 9.936 1918-2247 330 1
PS00022 PROSITE IPR013032 EGF-like domain signature 1. 0.0 12418-12450 33 1

60 ORFs

Contig Location Length Strand Sequence
127-14979 14853 1
1531-1872 342 -1
13882-14178 297 -1
2560-2853 294 -1
1980-2273 294 -1
6497-6739 243 1
13181-13417 237 1
2338-2556 219 -1
13477-13677 201 -1
13854-14048 195 1
11595-11777 183 -1
9455-9634 180 1
14413-14592 180 -1
9146-9322 177 1
3864-4037 174 1
14207-14380 174 1
10344-10517 174 -1
12085-12252 168 -1
11126-11290 165 -1
7930-8085 156 -1
236-388 153 1
6333-6485 153 -1
12534-12683 150 -1
12357-12506 150 -1
3043-3192 150 -1
2213-2356 144 1
13064-13204 141 -1
8767-8904 138 -1
7131-7268 138 -1
6533-6670 138 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)