Transcript : dd_Smed_v6_758_1_1 S. mediterranea
Length  2605     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY068380.1, clone H.1.10e unknown mRNA sequence
Paste the following link
 Feedback
  Feedback
Object Class
Object ID
Category
Your name:
Your email address:
Lab
Institute
Subject:
Message:
* Evidence
* Attachment size limit is 10 MB

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_003290.1 Homo sapiens heat shock protein 90kDa beta family member 1 0.0 245-2392 2148 1
NP_035761.1 Mus musculus heat shock protein 90, beta (Grp94), member 1 0.0 245-2392 2148 1
NP_777125.1 Bos taurus heat shock protein 90kDa beta family member 1 0.0 245-2392 2148 1

18 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00183 PFAM IPR001404 Hsp90 protein 1.3E-202 932-2455 1524 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 737-802 66 1
PF13589 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 2.5E-13 449-844 396 1
SSF55874 SSF IPR003594 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1.83E-65 386-1018 633 1
G3DSA:3.30.565.10 GENE3D IPR003594   2.1E-87 386-1003 618 1
G3DSA:3.30.565.10 GENE3D IPR003594   2.1E-87 1145-1186 42 1
SSF54211 SSF IPR020568 Ribosomal protein S5 domain 2-like 2.28E-90 1166-1924 759 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 596-646 51 1
PS00298 PROSITE IPR019805 Heat shock hsp90 proteins family signature. 0.0 446-472 27 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 650-700 51 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 944-997 54 1
PTHR11528:SF44 PANTHER ENDOPLASMIN 0.0 173-2521 2349 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 449-514 66 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 890-940 51 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 386-445 60 1
SSF110942 SSF HSP90 C-terminal domain 2.35E-29 1994-2371 378 1
SM00387 SMART IPR003594 Histidine kinase-like ATPases 0.0029 452-925 474 1
PTHR11528 PANTHER IPR001404 HEAT SHOCK PROTEIN 90 0.0 173-2521 2349 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

8 ORFs

Contig Location Length Strand Sequence
143-2527 2385 1
1846-2118 273 -1
2188-2391 204 -1
2027-2218 192 -1
1044-1193 150 -1
763-906 144 -1
2400-2540 141 1
403-519 117 -1

4 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105969 0.0 2 1561.9 0.8571977 258-2490 2233 1
TF300686 4.2E-224 2 745.4 0.81228405 387-2502 2116 1
TF315234 4.7E-53 2 178.7 0.42418426 1155-2259 1105 1
TF344108 0.0011 4 15.0 0.71708256 625-2494 1870 -1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)