Transcript : dd_Smed_v6_758_1_1 S. mediterranea

Length  2605     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY068380.1, clone H.1.10e unknown mRNA sequence
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Sequence Features

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3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_003290.1 Homo sapiens heat shock protein 90kDa beta family member 1 0.0 245-2392 2148 1
NP_035761.1 Mus musculus heat shock protein 90, beta (Grp94), member 1 0.0 245-2392 2148 1
NP_777125.1 Bos taurus heat shock protein 90kDa beta family member 1 0.0 245-2392 2148 1

18 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00183 PFAM IPR001404 Hsp90 protein 1.3E-202 932-2455 1524 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 737-802 66 1
PF13589 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 2.5E-13 449-844 396 1
SSF55874 SSF IPR003594 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1.83E-65 386-1018 633 1
G3DSA:3.30.565.10 GENE3D IPR003594   2.1E-87 386-1003 618 1
G3DSA:3.30.565.10 GENE3D IPR003594   2.1E-87 1145-1186 42 1
SSF54211 SSF IPR020568 Ribosomal protein S5 domain 2-like 2.28E-90 1166-1924 759 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 596-646 51 1
PS00298 PROSITE IPR019805 Heat shock hsp90 proteins family signature. 0.0 446-472 27 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 650-700 51 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 944-997 54 1
PTHR11528:SF44 PANTHER ENDOPLASMIN 0.0 173-2521 2349 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 449-514 66 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 890-940 51 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.3E-70 386-445 60 1
SSF110942 SSF HSP90 C-terminal domain 2.35E-29 1994-2371 378 1
SM00387 SMART IPR003594 Histidine kinase-like ATPases 0.0029 452-925 474 1
PTHR11528 PANTHER IPR001404 HEAT SHOCK PROTEIN 90 0.0 173-2521 2349 1

Genomics

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8 ORFs

Contig Location Length Strand Sequence
143-2527 2385 1
1846-2118 273 -1
2188-2391 204 -1
2027-2218 192 -1
1044-1193 150 -1
763-906 144 -1
2400-2540 141 1
403-519 117 -1

4 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105969 0.0 2 1561.9 0.8571977 258-2490 2233 1
TF300686 4.2E-224 2 745.4 0.81228405 387-2502 2116 1
TF315234 4.7E-53 2 178.7 0.42418426 1155-2259 1105 1
TF344108 0.0011 4 15.0 0.71708256 625-2494 1870 -1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)