Transcript : dd_Smed_v6_749_0_1 S. mediterranea

Length  2289     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067387.1, clone H.76.12c(T3) unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_728074.1 Drosophila melanogaster Fimbrin 4.0E-149 248-2035 1788 1
NP_032905.2 Mus musculus lymphocyte cytosolic protein 1 8.0E-145 224-2023 1800 1
XP_003436706.1 Anopheles gambiae str. PEST AGAP004071-PA 5.0E-155 245-2035 1791 1

19 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50021 PROFILE IPR001715 Calponin homology domain profile. 12.33 980-1324 345 1
PTHR19961 PANTHER FIMBRIN/PLASTIN 1.2E-227 224-2035 1812 1
PS50021 PROFILE IPR001715 Calponin homology domain profile. 16.292 1367-1690 324 1
G3DSA:1.10.418.10 GENE3D IPR001715 Actin-binding Protein, T-fimbrin; domain 1 8.7E-30 866-1312 447 1
G3DSA:1.10.418.10 GENE3D IPR001715 Actin-binding Protein, T-fimbrin; domain 1 1.2E-29 533-862 330 1
SM00033 SMART IPR001715 Calponin homology domain 8.4E-13 986-1318 333 1
SM00033 SMART IPR001715 Calponin homology domain 2.1E-16 1373-1684 312 1
G3DSA:1.10.418.10 GENE3D IPR001715 Actin-binding Protein, T-fimbrin; domain 1 7.4E-27 1346-1675 330 1
SM00033 SMART IPR001715 Calponin homology domain 1.2E-11 1730-2026 297 1
PF00307 PFAM IPR001715 Calponin homology (CH) domain 8.4E-16 989-1321 333 1
PF00307 PFAM IPR001715 Calponin homology (CH) domain 7.1E-18 560-889 330 1
PF00307 PFAM IPR001715 Calponin homology (CH) domain 4.6E-7 1736-2023 288 1
SSF47576 SSF IPR001715 Calponin-homology domain, CH-domain 1.96E-127 548-2020 1473 1
PS50021 PROFILE IPR001715 Calponin homology domain profile. 11.561 1724-2032 309 1
PS00019 PROSITE IPR001589 Actinin-type actin-binding domain signature 1. 0.0 1373-1399 27 1
PS50021 PROFILE IPR001715 Calponin homology domain profile. 18.387 548-895 348 1
SM00033 SMART IPR001715 Calponin homology domain 2.5E-25 554-889 336 1
PF00307 PFAM IPR001715 Calponin homology (CH) domain 7.8E-14 1376-1681 306 1
G3DSA:1.10.418.10 GENE3D IPR001715 Actin-binding Protein, T-fimbrin; domain 1 5.5E-23 1727-2020 294 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

10 ORFs

Contig Location Length Strand Sequence
191-2056 1866 1
646-885 240 -1
1690-1923 234 -1
314-538 225 -1
1108-1233 126 -1
1006-1119 114 1
1324-1434 111 -1
5-112 108 -1
1893-1997 105 1
1317-1421 105 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300680 1.2E-249 2 830.4 0.7854959 234-2031 1798 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)