Transcript : dd_Smed_v6_745_0_1 S. mediterranea

Length  2339     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067831.1, clone H.54.7a unknown mRNA sequence
AY067818.1, clone HB.18.10g unknown mRNA sequence
AY967700.1, clone NBE.8.09G mRNA sequence
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Sequence Features

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3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_058054.2 Mus musculus ATP synthase, H transporting mitochondrial F1 complex, beta subunit 0.0 306-1664 1359 1
NP_001677.2 Homo sapiens ATP synthase, H transporting, mitochondrial F1 complex, beta polypeptide 0.0 174-1664 1491 1
NP_498111.2 Caenorhabditis elegans ATP synthase subunit beta, mitochondrial 0.0 306-1664 1359 1

14 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 5.6E-90 483-1313 831 1
G3DSA:1.10.1140.10 GENE3D IPR024034 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 1.3E-54 1308-1658 351 1
TIGR01039 TIGRFAMs IPR005722 atpD: ATP synthase F1, beta subunit 4.9E-250 264-1652 1389 1
PF00306 PFAM IPR000793 ATP synthase alpha/beta chain, C terminal domain 3.1E-25 1341-1631 291 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 1.7E-111 480-1304 825 1
PTHR15184:SF32 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 0.0 93-1661 1569 1
PF00006 PFAM IPR000194 ATP synthase alpha/beta family, nucleotide-binding domain 3.8E-62 639-1298 660 1
SSF47917 SSF IPR000793 C-terminal domain of alpha and beta subunits of F1 ATP synthase 3.92E-52 1308-1652 345 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 1.4E-6 678-1229 552 1
SSF50615 SSF IPR004100 N-terminal domain of alpha and beta subunits of F1 ATP synthase 1.1E-23 261-473 213 1
G3DSA:2.40.10.170 GENE3D   8.7E-33 246-473 228 1
PTHR15184 PANTHER ATP SYNTHASE 0.0 93-1661 1569 1
PF02874 PFAM IPR004100 ATP synthase alpha/beta family, beta-barrel domain 7.2E-21 273-470 198 1
PS00152 PROSITE IPR020003 ATP synthase alpha and beta subunits signature. 0.0 1272-1298 27 1

Genomics

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7 ORFs

Contig Location Length Strand Sequence
96-1667 1572 1
985-1185 201 1
464-646 183 -1
1870-2037 168 -1
2157-2300 144 -1
2024-2158 135 1
186-308 123 -1

3 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300321 2.4E-24 3 85.9 0.46344593 402-1485 1084 1
TF105640 2.3E-255 3 846.9 0.5314237 423-1665 1243 1
TF300313 2.9E-20 3 72.0 0.44420692 444-1482 1039 1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)