Contig : dd_Smed_v6_743_0_1 S. mediterranea

Id  dd_Smed_v6_743_0_1 Length  727    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_631937.1 Mus musculus placenta-specific 8 5.0E-10 116-424 309 1
NP_057703.1 Homo sapiens placenta-specific 8 8.0E-9 116-421 306 1
XP_005110122.1 Aplysia californica cell number regulator 10-like 1.0E-19 128-418 291 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF04749 PFAM IPR006461 PLAC8 family 6.4E-22 128-397 270 1
PTHR15907 PANTHER FAMILY NOT NAMED 8.2E-26 128-397 270 1
TIGR01571 TIGRFAMs IPR006461 A_thal_Cys_rich: uncharacterized Cys-rich domain 5.2E-20 128-397 270 1

5 ORFs

Contig Location Length Strand Sequence
98-442 345 1
3-173 171 1
169-294 126 1
72-194 123 -1
622-726 105 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)