Transcript : dd_Smed_v6_743_0_1 S. mediterranea

Length  727     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY066338.1, clone H.104.9g unknown mRNA sequence

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_631937.1 Mus musculus placenta-specific 8 5.0E-10 116-424 309 1
NP_057703.1 Homo sapiens placenta-specific 8 8.0E-9 116-421 306 1
XP_005110122.1 Aplysia californica cell number regulator 10-like 1.0E-19 128-418 291 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF04749 PFAM IPR006461 PLAC8 family 6.4E-22 128-397 270 1
PTHR15907 PANTHER FAMILY NOT NAMED 8.2E-26 128-397 270 1
TIGR01571 TIGRFAMs IPR006461 A_thal_Cys_rich: uncharacterized Cys-rich domain 5.2E-20 128-397 270 1


Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
98-442 345 1
3-173 171 1
169-294 126 1
72-194 123 -1
622-726 105 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer

To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)