Transcript : dd_Smed_v6_731_0_1 S. mediterranea

Length  1851     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067830.1, clone H.55.3c unknown mRNA sequence
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Sequence Features

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3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_004037.1 Homo sapiens ATP synthase, H transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 0.0 170-1723 1554 1
NP_031531.1 Mus musculus ATP synthase, H transporting, mitochondrial F1 complex, alpha subunit 1 0.0 170-1723 1554 1
NP_777109.1 Bos taurus ATP synthase, H transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 0.0 170-1723 1554 1

13 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 7.79E-102 482-1327 846 1
PTHR15184:SF39 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 0.0 95-1720 1626 1
G3DSA:1.20.150.20 GENE3D   5.0E-58 1334-1717 384 1
PTHR15184 PANTHER ATP SYNTHASE 0.0 95-1720 1626 1
G3DSA:2.40.30.20 GENE3D IPR023366   2.4E-39 209-469 261 1
PF02874 PFAM IPR004100 ATP synthase alpha/beta family, beta-barrel domain 2.9E-19 272-469 198 1
SSF50615 SSF IPR004100 N-terminal domain of alpha and beta subunits of F1 ATP synthase 1.07E-27 224-475 252 1
PF00006 PFAM IPR000194 ATP synthase alpha/beta family, nucleotide-binding domain 2.1E-72 638-1309 672 1
TIGR00962 TIGRFAMs IPR005294 atpA: ATP synthase F1, alpha subunit 2.6E-245 212-1717 1506 1
PS00152 PROSITE IPR020003 ATP synthase alpha and beta subunits signature. 0.0 1283-1309 27 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 4.8E-126 476-1330 855 1
PF00306 PFAM IPR000793 ATP synthase alpha/beta chain, C terminal domain 8.4E-27 1346-1645 300 1
SSF47917 SSF IPR000793 C-terminal domain of alpha and beta subunits of F1 ATP synthase 1.99E-46 1334-1717 384 1

Genomics

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3 ORFs

Contig Location Length Strand Sequence
92-1732 1641 1
1194-1343 150 1
999-1130 132 1

4 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300321 3.0E-285 2 945.2 0.8141545 216-1722 1507 1
TF300313 3.3E-21 2 75.2 0.49810913 414-1335 922 1
TF105640 4.6E-19 2 68.4 0.5159373 444-1398 955 1
TF300811 1.3E-9 2 37.5 0.40896812 618-1374 757 1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)