Contig : dd_Smed_v6_724_0_1 S. mediterranea

Id  dd_Smed_v6_724_0_1 Length  1525    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_004631.1 Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 0.0 174-1379 1206 1
NP_062667.1 Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 0.0 180-1379 1200 1
NP_957237.1 Danio rerio HLA-B associated transcript 1 0.0 195-1379 1185 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 1.88E-65 441-1289 849 1
PF00270 PFAM IPR011545 DEAD/DEAH box helicase 8.4E-37 306-803 498 1
PF00271 PFAM IPR001650 Helicase conserved C-terminal domain 5.3E-21 1017-1244 228 1
PTHR24031:SF212 PANTHER ATP-DEPENDENT RNA HELICASE DDX39A 4.5E-285 126-1379 1254 1
PS51194 PROFILE IPR001650 Superfamilies 1 and 2 helicase C-terminal domain profile. 21.369 882-1364 483 1
SM00490 SMART IPR001650 helicase superfamily c-terminal domain 4.4E-24 1002-1244 243 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 8.2E-48 867-1343 477 1
PTHR24031 PANTHER FAMILY NOT NAMED 4.5E-285 126-1379 1254 1
SM00487 SMART IPR014001 DEAD-like helicases superfamily 1.1E-53 288-893 606 1
PS51192 PROFILE IPR014001 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25.486 324-845 522 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 1.5E-72 198-863 666 1
PS51195 PROFILE IPR014014 DEAD-box RNA helicase Q motif profile. 9.458 231-314 84 1

5 ORFs

Contig Location Length Strand Sequence
114-1382 1269 1
241-438 198 -1
548-682 135 -1
320-430 111 1
1423-1524 102 -1

20 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300442 3.4E-258 3 857.5 0.8190164 129-1377 1249 1
TF300340 7.0E-65 3 219.3 0.7678689 183-1353 1171 1
TF300440 6.2E-96 3 321.8 0.7580328 222-1377 1156 1
TF314780 3.4E-52 3 176.8 0.7068852 225-1302 1078 1
TF105707 8.0E-32 3 108.9 0.6891803 228-1278 1051 1
TF300466 1.8E-106 3 356.1 0.7344262 234-1353 1120 1
TF315215 7.6E-39 3 132.6 0.6891803 234-1284 1051 1
TF352222 7.4E-90 3 302.3 0.7304918 237-1350 1114 1
TF300364 3.1E-70 3 236.9 0.7009836 237-1305 1069 1
TF314957 4.4E-70 3 235.5 0.7245902 237-1341 1105 1
TF300351 2.2E-43 3 147.9 0.68524593 237-1281 1045 1
TF300527 8.0E-54 3 182.1 0.6813115 252-1290 1039 1
TF300471 6.4E-51 3 172.3 0.6695082 252-1272 1021 1
TF101524 1.4E-124 3 416.5 0.7127869 255-1341 1087 1
TF300332 9.3E-49 3 166.3 0.6813115 255-1293 1039 1
TF105714 1.2E-76 3 257.7 0.6813115 258-1296 1039 1
TF330866 4.5E-67 3 226.3 0.69508195 258-1317 1060 1
TF312949 1.3E-54 3 184.7 0.6734426 258-1284 1027 1
TF354236 1.8E-49 3 167.8 0.58885247 450-1347 898 1
TF320511 2.3E-40 3 136.8 0.46885246 603-1317 715 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)