Contig : dd_Smed_v6_7243_0_1 S. mediterranea

Id  dd_Smed_v6_7243_0_1 Length  1717    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_477464.1 Drosophila melanogaster Synaptotagmin 4 2.0E-92 619-1449 831 1
NP_061274.2 Mus musculus synaptotagmin XI 5.0E-78 625-1449 825 1
NP_689493.3 Homo sapiens synaptotagmin XI 9.0E-78 625-1449 825 1

19 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10024:SF187 PANTHER FI18813P1 2.4E-133 616-1446 831 1
SM00239 SMART IPR000008 Protein kinase C conserved region 2 (CalB) 3.2E-16 670-981 312 1
SM00239 SMART IPR000008 Protein kinase C conserved region 2 (CalB) 1.4E-17 1078-1425 348 1
PS50004 PROFILE IPR000008 C2 domain profile. 18.049 673-936 264 1
SSF49562 SSF IPR000008 C2 domain (Calcium/lipid-binding domain, CaLB) 3.41E-32 1033-1440 408 1
PTHR10024 PANTHER SYNAPTOTAGMIN 2.4E-133 616-1446 831 1
PF00168 PFAM IPR000008 C2 domain 5.8E-23 673-933 261 1
PF00168 PFAM IPR000008 C2 domain 1.6E-19 1081-1347 267 1
PS50004 PROFILE IPR000008 C2 domain profile. 18.922 1081-1350 270 1
PR00399 PRINTS IPR001565 Synaptotagmin signature 4.53E-7 850-894 45 1
PR00399 PRINTS IPR001565 Synaptotagmin signature 4.53E-7 634-678 45 1
PR00399 PRINTS IPR001565 Synaptotagmin signature 4.53E-7 910-939 30 1
PR00399 PRINTS IPR001565 Synaptotagmin signature 4.53E-7 679-717 39 1
G3DSA:2.60.40.150 GENE3D IPR000008 C2- domain Calcium/lipid binding domain 2.6E-37 1000-1440 441 1
G3DSA:2.60.40.150 GENE3D IPR000008 C2- domain Calcium/lipid binding domain 1.0E-34 604-957 354 1
SSF49562 SSF IPR000008 C2 domain (Calcium/lipid-binding domain, CaLB) 1.32E-32 622-975 354 1
PR00360 PRINTS IPR000008 C2 domain signature 2.25E-5 1291-1314 24 1
PR00360 PRINTS IPR000008 C2 domain signature 2.25E-5 1129-1164 36 1
PR00360 PRINTS IPR000008 C2 domain signature 2.25E-5 1216-1254 39 1

8 ORFs

Contig Location Length Strand Sequence
226-1449 1224 1
1100-1246 147 -1
431-577 147 -1
1573-1716 144 -1
97-222 126 1
3-119 117 1
1279-1389 111 -1
1431-1532 102 1

4 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF317035 3.4E-9 1 34.8 0.49854398 588-1443 856 1
TF351666 4.9E-150 1 501.3 0.49854398 594-1449 856 1
TF351844 6.0E-42 1 142.8 0.4793244 627-1449 823 1
TF341184 4.1E-23 1 79.9 0.43564355 630-1377 748 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)