Transcript : dd_Smed_v6_7243_0_1 S. mediterranea

Length  1717     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_477464.1 Drosophila melanogaster Synaptotagmin 4 2.0E-92 619-1449 831 1
NP_061274.2 Mus musculus synaptotagmin XI 5.0E-78 625-1449 825 1
NP_689493.3 Homo sapiens synaptotagmin 11 9.0E-78 625-1449 825 1

19 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10024:SF187 PANTHER FI18813P1 2.4E-133 616-1446 831 1
SM00239 SMART IPR000008 Protein kinase C conserved region 2 (CalB) 3.2E-16 670-981 312 1
SM00239 SMART IPR000008 Protein kinase C conserved region 2 (CalB) 1.4E-17 1078-1425 348 1
PS50004 PROFILE IPR000008 C2 domain profile. 18.049 673-936 264 1
SSF49562 SSF IPR000008 C2 domain (Calcium/lipid-binding domain, CaLB) 3.41E-32 1033-1440 408 1
PTHR10024 PANTHER SYNAPTOTAGMIN 2.4E-133 616-1446 831 1
PF00168 PFAM IPR000008 C2 domain 5.8E-23 673-933 261 1
PF00168 PFAM IPR000008 C2 domain 1.6E-19 1081-1347 267 1
PS50004 PROFILE IPR000008 C2 domain profile. 18.922 1081-1350 270 1
PR00399 PRINTS IPR001565 Synaptotagmin signature 4.53E-7 850-894 45 1
PR00399 PRINTS IPR001565 Synaptotagmin signature 4.53E-7 634-678 45 1
PR00399 PRINTS IPR001565 Synaptotagmin signature 4.53E-7 910-939 30 1
PR00399 PRINTS IPR001565 Synaptotagmin signature 4.53E-7 679-717 39 1
G3DSA:2.60.40.150 GENE3D IPR000008 C2- domain Calcium/lipid binding domain 2.6E-37 1000-1440 441 1
G3DSA:2.60.40.150 GENE3D IPR000008 C2- domain Calcium/lipid binding domain 1.0E-34 604-957 354 1
SSF49562 SSF IPR000008 C2 domain (Calcium/lipid-binding domain, CaLB) 1.32E-32 622-975 354 1
PR00360 PRINTS IPR000008 C2 domain signature 2.25E-5 1291-1314 24 1
PR00360 PRINTS IPR000008 C2 domain signature 2.25E-5 1129-1164 36 1
PR00360 PRINTS IPR000008 C2 domain signature 2.25E-5 1216-1254 39 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

8 ORFs

Contig Location Length Strand Sequence
226-1449 1224 1
1100-1246 147 -1
431-577 147 -1
1573-1716 144 -1
97-222 126 1
3-119 117 1
1279-1389 111 -1
1431-1532 102 1

4 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF317035 3.4E-9 1 34.8 0.49854398 588-1443 856 1
TF351666 4.9E-150 1 501.3 0.49854398 594-1449 856 1
TF351844 6.0E-42 1 142.8 0.4793244 627-1449 823 1
TF341184 4.1E-23 1 79.9 0.43564355 630-1377 748 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)