Contig : dd_Smed_v6_7131_0_1 S. mediterranea

Id  dd_Smed_v6_7131_0_1 Length  673    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006525078.1 Mus musculus peptidase inhibitor 16 2.0E-29 90-620 531 1
XP_005248974.1 Homo sapiens peptidase inhibitor 16 1.0E-28 84-623 540 1
XP_003731924.1 Strongylocentrotus purpuratus peptidase inhibitor 16-like 4.0E-36 90-620 531 1

14 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00838 PRINTS IPR002413 Venom allergen 5 signature 3.0E-11 414-470 57 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 3.0E-11 342-386 45 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.3E-14 507-545 39 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 3.0E-11 120-179 60 1
SSF55797 SSF IPR014044 PR-1-like 3.92E-48 51-566 516 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 3.0E-11 198-251 54 1
G3DSA:3.40.33.10 GENE3D IPR014044 Pathogenesis-related Protein p14a 7.3E-55 93-617 525 1
PS01009 PROSITE IPR018244 CRISP family signature 1. 0.0 420-449 30 1
PF00188 PFAM IPR014044 Cysteine-rich secretory protein family 3.3E-19 117-521 405 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.3E-14 417-464 48 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.3E-14 198-251 54 1
SM00198 SMART IPR001283 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. 3.2E-44 99-545 447 1
PTHR10334 PANTHER IPR001283 CYSTEINE-RICH SECRETORY PROTEIN-RELATED 4.6E-62 36-617 582 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.3E-14 348-386 39 1

2 ORFs

Contig Location Length Strand Sequence
3-623 621 1
507-671 165 -1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313138 1.1E-29 3 102.7 0.66567606 111-558 448 1
TF350472 2.2E-24 3 85.9 0.70579493 111-585 475 1
TF352353 5.9E-23 3 80.1 0.7369985 114-609 496 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)