Transcript : dd_Smed_v6_711_0_1 S. mediterranea

Length  3326     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067291.1, clone H.36.11e unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_724007.1 Drosophila melanogaster Myosin heavy chain 5.0E-91 440-2827 2388 1
XP_005104354.1 Aplysia californica myosin heavy chain, striated muscle-like 1.0E-101 362-2824 2463 1
XP_003143708.1 Loa loa myosin heavy chain 7.0E-97 362-2764 2403 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF90257 SSF Myosin rod fragments 3.92E-20 686-1027 342 1
PTHR13140 PANTHER MYOSIN 5.8E-200 311-2782 2472 1
PTHR13140:SF334 PANTHER PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY H MEM 5.8E-200 311-2782 2472 1
PF01576 PFAM IPR002928 Myosin tail 2.0E-255 299-2743 2445 1
SSF90257 SSF Myosin rod fragments 3.4E-8 1271-1630 360 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

7 ORFs

Contig Location Length Strand Sequence
230-2830 2601 1
871-1248 378 -1
2683-2847 165 -1
406-555 150 -1
390-500 111 1
2639-2746 108 -1
1-102 102 -1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF336753 2.1E-288 2 959.3 0.73181 303-2736 2434 1
TF333601 2.5E-49 2 166.0 0.72910404 312-2736 2425 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)