Contig : dd_Smed_v6_711_0_1 S. mediterranea

Id  dd_Smed_v6_711_0_1 Length  3326    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_724007.1 Drosophila melanogaster Myosin heavy chain 5.0E-91 440-2827 2388 1
XP_005104354.1 Aplysia californica myosin heavy chain, striated muscle-like 1.0E-101 362-2824 2463 1
XP_003143708.1 Loa loa myosin heavy chain 7.0E-97 362-2764 2403 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF90257 SSF Myosin rod fragments 3.92E-20 686-1027 342 1
PTHR13140 PANTHER MYOSIN 5.8E-200 311-2782 2472 1
PTHR13140:SF334 PANTHER PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY H MEM 5.8E-200 311-2782 2472 1
PF01576 PFAM IPR002928 Myosin tail 2.0E-255 299-2743 2445 1
SSF90257 SSF Myosin rod fragments 3.4E-8 1271-1630 360 1

7 ORFs

Contig Location Length Strand Sequence
230-2830 2601 1
871-1248 378 -1
2683-2847 165 -1
406-555 150 -1
390-500 111 1
2639-2746 108 -1
1-102 102 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF336753 2.1E-288 2 959.3 0.73181 303-2736 2434 1
TF333601 2.5E-49 2 166.0 0.72910404 312-2736 2425 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)