Transcript : dd_Smed_v6_7034_0_1 S. mediterranea

Length  4262     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY066320.1, clone H.100.5g unknown mRNA sequence
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_725189.1 Drosophila melanogaster CG8815 gene product from transcript CG8815-RC 2.0E-47 1041-2810 1770 1
NP_056292.1 Homo sapiens SIN3 transcription regulator family member A 3.0E-43 1356-2480 1125 1
XP_006793888.1 Neolamprologus brichardi paired amphipathic helix protein Sin3a-like 1.0E-92 42-2357 2316 1

11 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.20.1160.11 GENE3D IPR003822   6.0E-29 639-881 243 1
G3DSA:1.20.1160.11 GENE3D IPR003822   1.2E-21 138-347 210 1
PF08295 PFAM IPR013194 Sin3 family co-repressor 3.6E-21 1743-2033 291 1
PF02671 PFAM IPR003822 Paired amphipathic helix repeat 1.6E-14 714-878 165 1
PF02671 PFAM IPR003822 Paired amphipathic helix repeat 7.1E-15 210-344 135 1
SSF47762 SSF IPR003822 PAH2 domain 9.42E-19 141-347 207 1
PS51477 PROFILE IPR003822 PAH domain profile. 17.104 147-350 204 1
SM00761 SMART IPR013194 Histone deacetylase (HDAC) interacting 4.8E-20 1737-2045 309 1
PTHR12346 PANTHER SIN3B-RELATED 2.9E-164 150-3284 3135 1
PS51477 PROFILE IPR003822 PAH domain profile. 16.076 648-884 237 1
SSF47762 SSF IPR003822 PAH2 domain 1.7E-19 645-881 237 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

13 ORFs

Contig Location Length Strand Sequence
45-4193 4149 1
916-1179 264 1
2446-2676 231 -1
2690-2860 171 -1
2679-2834 156 -1
2091-2246 156 -1
2818-2967 150 1
3526-3663 138 1
300-410 111 -1
3627-3734 108 -1
1562-1666 105 -1
3918-4019 102 -1
1113-1214 102 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF106187 1.5E-199 3 666.1 0.73650867 150-3288 3139 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)