Transcript : dd_Smed_v6_698_0_1 S. mediterranea

Length  1021     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY066693.1, clone H.83.11g unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_523414.1 Drosophila melanogaster CG12530 gene product from transcript CG12530-RC 6.0E-109 107-682 576 1
NP_426359.1 Homo sapiens cell division cycle 42 4.0E-108 107-682 576 1
XP_003696353.1 Apis florea cdc42 homolog 2.0E-111 101-682 582 1

15 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
TIGR00231 TIGRFAMs IPR005225 small_GTP: small GTP-binding protein domain 1.6E-40 110-574 465 1
SM00175 SMART IPR003579 Rab subfamily of small GTPases 2.2E-13 116-640 525 1
PS51420 PROFILE IPR003578 small GTPase Rho family profile. 26.881 95-631 537 1
PTHR24072 PANTHER RHO FAMILY GTPASE 4.1E-136 98-679 582 1
SM00173 SMART IPR020849 Ras subfamily of RAS small GTPases 1.1E-15 107-640 534 1
PF00071 PFAM IPR001806 Ras family 5.1E-53 119-628 510 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.4E-63 110-646 537 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 1.2E-55 113-622 510 1
SM00174 SMART IPR003578 Rho (Ras homology) subfamily of Ras-like small GTPases 5.6E-123 122-640 519 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.1E-29 236-301 66 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.1E-29 422-460 39 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.1E-29 116-178 63 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.1E-29 566-631 66 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.1E-29 185-232 48 1
PTHR24072:SF129 PANTHER CDC42L PROTEIN 4.1E-136 98-679 582 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
104-682 579 1
624-770 147 -1

21 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF317762 2.8E-8 2 31.4 0.5122429 108-630 523 1
TF331746 8.3E-72 2 241.1 0.5445641 111-666 556 1
TF313448 2.0E-17 2 62.0 0.4975514 111-618 508 1
TF300803 2.9E-11 2 42.2 0.5122429 111-633 523 1
TF331219 1.1E-56 2 192.0 0.5004897 114-624 511 1
TF323347 3.4E-48 2 163.3 0.5122429 114-636 523 1
TF326626 4.9E-10 2 37.4 0.49167484 114-615 502 1
TF321839 3.7E-101 2 338.5 0.52987266 117-657 541 1
TF350739 3.8E-50 2 170.1 0.5151812 117-642 526 1
TF328564 8.8E-16 2 56.5 0.5004897 117-627 511 1
TF313106 5.7E-9 2 33.7 0.45641527 117-582 466 1
TF330887 2.2E-56 2 190.8 0.52399606 120-654 535 1
TF313199 9.5E-15 2 54.2 0.48873654 120-618 499 1
TF314986 1.4E-18 2 66.1 0.4946131 123-627 505 1
TF312895 6.1E-17 2 61.8 0.47404507 123-606 484 1
TF315926 8.3E-11 2 40.5 0.4505387 123-582 460 1
TF300837 9.8E-104 2 347.1 0.54162586 126-678 553 1
TF316238 1.3E-5 2 23.1 0.47992164 126-615 490 1
TF323428 4.5E-16 2 57.8 0.453477 129-591 463 1
TF331262 1.6E-9 2 37.4 0.46816847 144-621 478 1
TF105954 5.6E-21 2 74.6 0.46229187 147-618 472 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)