Contig : dd_Smed_v6_698_0_1 S. mediterranea

Id  dd_Smed_v6_698_0_1 Length  1021    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_523414.1 Drosophila melanogaster CG12530 gene product from transcript CG12530-RC 6.0E-109 107-682 576 1
NP_426359.1 Homo sapiens cell division cycle 42 4.0E-108 107-682 576 1
XP_003696353.1 Apis florea cdc42 homolog 2.0E-111 101-682 582 1

15 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
TIGR00231 TIGRFAMs IPR005225 small_GTP: small GTP-binding protein domain 1.6E-40 110-574 465 1
SM00175 SMART IPR003579 Rab subfamily of small GTPases 2.2E-13 116-640 525 1
PS51420 PROFILE IPR003578 small GTPase Rho family profile. 26.881 95-631 537 1
PTHR24072 PANTHER RHO FAMILY GTPASE 4.1E-136 98-679 582 1
SM00173 SMART IPR020849 Ras subfamily of RAS small GTPases 1.1E-15 107-640 534 1
PF00071 PFAM IPR001806 Ras family 5.1E-53 119-628 510 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.4E-63 110-646 537 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 1.2E-55 113-622 510 1
SM00174 SMART IPR003578 Rho (Ras homology) subfamily of Ras-like small GTPases 5.6E-123 122-640 519 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.1E-29 236-301 66 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.1E-29 422-460 39 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.1E-29 116-178 63 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.1E-29 566-631 66 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.1E-29 185-232 48 1
PTHR24072:SF129 PANTHER CDC42L PROTEIN 4.1E-136 98-679 582 1

2 ORFs

Contig Location Length Strand Sequence
104-682 579 1
624-770 147 -1

21 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF317762 2.8E-8 2 31.4 0.5122429 108-630 523 1
TF331746 8.3E-72 2 241.1 0.5445641 111-666 556 1
TF313448 2.0E-17 2 62.0 0.4975514 111-618 508 1
TF300803 2.9E-11 2 42.2 0.5122429 111-633 523 1
TF331219 1.1E-56 2 192.0 0.5004897 114-624 511 1
TF323347 3.4E-48 2 163.3 0.5122429 114-636 523 1
TF326626 4.9E-10 2 37.4 0.49167484 114-615 502 1
TF321839 3.7E-101 2 338.5 0.52987266 117-657 541 1
TF350739 3.8E-50 2 170.1 0.5151812 117-642 526 1
TF328564 8.8E-16 2 56.5 0.5004897 117-627 511 1
TF313106 5.7E-9 2 33.7 0.45641527 117-582 466 1
TF330887 2.2E-56 2 190.8 0.52399606 120-654 535 1
TF313199 9.5E-15 2 54.2 0.48873654 120-618 499 1
TF314986 1.4E-18 2 66.1 0.4946131 123-627 505 1
TF312895 6.1E-17 2 61.8 0.47404507 123-606 484 1
TF315926 8.3E-11 2 40.5 0.4505387 123-582 460 1
TF300837 9.8E-104 2 347.1 0.54162586 126-678 553 1
TF316238 1.3E-5 2 23.1 0.47992164 126-615 490 1
TF323428 4.5E-16 2 57.8 0.453477 129-591 463 1
TF331262 1.6E-9 2 37.4 0.46816847 144-621 478 1
TF105954 5.6E-21 2 74.6 0.46229187 147-618 472 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)