Transcript : dd_Smed_v6_697_0_1 S. mediterranea

Length  1387     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067357.1, clone H.33.12d(T3) unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_008305463.1 Cynoglossus semilaevis plasminogen activator inhibitor 1 RNA-binding protein-like 2.0E-12 476-856 381 1
XP_005795746.1 Xiphophorus maculatus plasminogen activator inhibitor 1 RNA-binding protein-like 3.0E-12 476-1033 558 1
XP_008296048.1 Stegastes partitus plasminogen activator inhibitor 1 RNA-binding protein-like 6.0E-12 476-862 387 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR12299:SF17 PANTHER AT19571P-RELATED 6.8E-25 71-949 879 1
PTHR12299 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 6.8E-25 71-949 879 1
PF04774 PFAM IPR006861 Hyaluronan / mRNA binding family 3.5E-17 476-721 246 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

8 ORFs

Contig Location Length Strand Sequence
59-1033 975 1
281-493 213 -1
294-419 126 1
453-578 126 1
72-197 126 -1
716-820 105 -1
897-998 102 1
319-420 102 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)