Contig : dd_Smed_v6_697_0_1 S. mediterranea

Id  dd_Smed_v6_697_0_1 Length  1387    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_008305463.1 Cynoglossus semilaevis plasminogen activator inhibitor 1 RNA-binding protein-like 2.0E-12 476-856 381 1
XP_005795746.1 Xiphophorus maculatus plasminogen activator inhibitor 1 RNA-binding protein-like 3.0E-12 476-1033 558 1
XP_008296048.1 Stegastes partitus plasminogen activator inhibitor 1 RNA-binding protein-like 6.0E-12 476-862 387 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR12299:SF17 PANTHER AT19571P-RELATED 6.8E-25 71-949 879 1
PTHR12299 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 6.8E-25 71-949 879 1
PF04774 PFAM IPR006861 Hyaluronan / mRNA binding family 3.5E-17 476-721 246 1

8 ORFs

Contig Location Length Strand Sequence
59-1033 975 1
281-493 213 -1
294-419 126 1
453-578 126 1
72-197 126 -1
716-820 105 -1
897-998 102 1
319-420 102 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)