Contig : dd_Smed_v6_686_0_1 S. mediterranea

Id  dd_Smed_v6_686_0_1 Length  1170    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_611695.1 Drosophila melanogaster CG2852 gene product from transcript CG2852-RD 6.0E-65 170-727 558 1
NP_000933.1 Homo sapiens peptidylprolyl isomerase B (cyclophilin B) 3.0E-63 167-721 555 1
NP_035279.2 Mus musculus peptidylprolyl isomerase B 3.0E-62 167-721 555 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11071:SF11 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2.9E-116 92-727 636 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 3.4E-35 563-607 45 1
G3DSA:2.40.100.10 GENE3D IPR029000 Cyclophilin 3.4E-76 179-682 504 1
PS00170 PROSITE IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 0.0 335-385 51 1
PF00160 PFAM IPR002130 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7.0E-48 200-679 480 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 3.4E-35 524-559 36 1
SSF50891 SSF IPR029000 Cyclophilin-like 1.39E-70 176-685 510 1
PTHR11071 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2.9E-116 92-727 636 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 3.4E-35 248-292 45 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 3.4E-35 479-523 45 1
PS50072 PROFILE IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 44.268 197-682 486 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 3.4E-35 350-385 36 1

2 ORFs

Contig Location Length Strand Sequence
110-730 621 1
941-1051 111 -1

7 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF312801 3.6E-91 2 305.5 0.42136753 192-684 493 1
TF324493 1.4E-83 2 280.2 0.42649573 192-690 499 1
TF351326 1.3E-57 2 194.6 0.42136753 192-684 493 1
TF354259 1.2E-124 2 415.5 0.44957265 195-720 526 1
TF312958 3.3E-75 2 252.6 0.41880342 195-684 490 1
TF318563 9.3E-70 2 234.7 0.41367522 198-681 484 1
TF313817 2.5E-64 2 217.1 0.41111112 204-684 481 1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)