Contig : dd_Smed_v6_681_0_1 S. mediterranea

Id  dd_Smed_v6_681_0_1 Length  834    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006525078.1 Mus musculus peptidase inhibitor 16 2.0E-28 116-649 534 1
XP_005248974.1 Homo sapiens peptidase inhibitor 16 4.0E-26 116-646 531 1
XP_003731924.1 Strongylocentrotus purpuratus peptidase inhibitor 16-like 1.0E-34 116-646 531 1

13 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS01010 PROSITE IPR018244 CRISP family signature 2. 0.0 533-565 33 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.0E-15 533-571 39 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.0E-15 224-277 54 1
SM00198 SMART IPR001283 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. 1.6E-52 125-571 447 1
PTHR10334 PANTHER IPR001283 CYSTEINE-RICH SECRETORY PROTEIN-RELATED 4.6E-68 113-646 534 1
G3DSA:3.40.33.10 GENE3D IPR014044 Pathogenesis-related Protein p14a 9.6E-59 110-643 534 1
SSF55797 SSF IPR014044 PR-1-like 7.19E-51 77-592 516 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 1.7E-11 368-412 45 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 1.7E-11 440-496 57 1
PF00188 PFAM IPR014044 Cysteine-rich secretory protein family 8.2E-21 146-547 402 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 1.7E-11 113-160 48 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.0E-15 374-412 39 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.0E-15 443-490 48 1

3 ORFs

Contig Location Length Strand Sequence
56-649 594 1
381-602 222 -1
549-668 120 1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF352353 2.3E-18 2 64.9 0.6270983 132-654 523 1
TF350472 2.1E-20 2 72.8 0.56594723 141-612 472 1
TF313138 4.1E-32 2 110.7 0.5227818 144-579 436 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)