Transcript : dd_Smed_v6_6756_0_1 S. mediterranea

Length  1037     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_650264.1 Drosophila melanogaster CG8483 gene product from transcript CG8483-RA 6.0E-31 107-592 486 1
NP_084485.1 Mus musculus cysteine-rich secretory protein LCCL domain containing 2 2.0E-26 107-685 579 1
XP_003731924.1 Strongylocentrotus purpuratus peptidase inhibitor 16 1.0E-32 107-616 510 1

13 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00188 PFAM IPR014044 Cysteine-rich secretory protein family 4.6E-18 137-538 402 1
SM00198 SMART IPR001283 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. 1.2E-38 116-562 447 1
PTHR10334 PANTHER IPR001283 CYSTEINE-RICH SECRETORY PROTEIN-RELATED 3.5E-62 41-622 582 1
G3DSA:3.40.33.10 GENE3D IPR014044 Pathogenesis-related Protein p14a 9.7E-54 101-637 537 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.8E-14 365-403 39 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.8E-14 434-481 48 1
PS01010 PROSITE IPR018244 CRISP family signature 2. 0.0 524-556 33 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 4.3E-9 359-403 45 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.8E-14 524-562 39 1
SSF55797 SSF IPR014044 PR-1-like 4.71E-50 83-583 501 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.8E-14 215-268 54 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 4.3E-9 431-487 57 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 4.3E-9 104-151 48 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

7 ORFs

Contig Location Length Strand Sequence
41-643 603 1
779-1036 258 -1
440-643 204 -1
95-280 186 -1
225-389 165 1
540-662 123 1
913-1035 123 -1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF350472 2.9E-26 2 92.1 0.45805207 129-603 475 1
TF352353 2.9E-10 2 38.1 0.42333654 183-621 439 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)