Contig : dd_Smed_v6_6756_0_1 S. mediterranea

Id  dd_Smed_v6_6756_0_1 Length  1037    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_650264.1 Drosophila melanogaster CG8483 gene product from transcript CG8483-RA 6.0E-31 107-592 486 1
NP_084485.1 Mus musculus cysteine-rich secretory protein LCCL domain containing 2 2.0E-26 107-685 579 1
XP_003731924.1 Strongylocentrotus purpuratus peptidase inhibitor 16-like 1.0E-32 107-616 510 1

13 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00188 PFAM IPR014044 Cysteine-rich secretory protein family 4.6E-18 137-538 402 1
SM00198 SMART IPR001283 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. 1.2E-38 116-562 447 1
PTHR10334 PANTHER IPR001283 CYSTEINE-RICH SECRETORY PROTEIN-RELATED 3.5E-62 41-622 582 1
G3DSA:3.40.33.10 GENE3D IPR014044 Pathogenesis-related Protein p14a 9.7E-54 101-637 537 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.8E-14 365-403 39 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.8E-14 434-481 48 1
PS01010 PROSITE IPR018244 CRISP family signature 2. 0.0 524-556 33 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 4.3E-9 359-403 45 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.8E-14 524-562 39 1
SSF55797 SSF IPR014044 PR-1-like 4.71E-50 83-583 501 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.8E-14 215-268 54 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 4.3E-9 431-487 57 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 4.3E-9 104-151 48 1

7 ORFs

Contig Location Length Strand Sequence
41-643 603 1
779-1036 258 -1
440-643 204 -1
95-280 186 -1
225-389 165 1
540-662 123 1
913-1035 123 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF350472 2.9E-26 2 92.1 0.45805207 129-603 475 1
TF352353 2.9E-10 2 38.1 0.42333654 183-621 439 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)