Contig : dd_Smed_v6_672_0_1 S. mediterranea

Id  dd_Smed_v6_672_0_1 Length  656    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_523792.2 Drosophila melanogaster FK506-binding protein 2 2.0E-49 78-401 324 1
NP_004107.1 Homo sapiens FK506 binding protein 1B, 12.6 kDa 2.0E-47 78-401 324 1
NP_058559.3 Mus musculus FK506 binding protein 1b 6.0E-47 78-401 324 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50059 PROFILE IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 31.91 135-398 264 1
PF00254 PFAM IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase 2.3E-32 123-389 267 1
SSF54534 SSF FKBP-like 1.3E-41 60-398 339 1
PTHR10516 PANTHER IPR023566 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2.2E-60 75-398 324 1
G3DSA:3.10.50.40 GENE3D   8.7E-48 78-395 318 1

1 ORFs

Contig Location Length Strand Sequence
78-401 324 1

7 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105296 3.1E-33 3 114.7 0.5594512 33-399 367 1
TF105291 1.1E-73 3 247.3 0.49085367 78-399 322 1
TF105293 1.3E-27 3 96.8 0.4542683 99-396 298 1
TF105295 2.0E-24 3 84.6 0.45884147 99-399 301 1
TF105292 5.3E-48 3 162.5 0.4542683 102-399 298 1
TF354214 2.0E-31 3 107.4 0.40853658 126-393 268 1
TF328592 9.0E-22 3 75.8 0.41310975 135-405 271 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)