Transcript : dd_Smed_v6_67158_0_1 S. mediterranea

Length  795     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_648284.1 Drosophila melanogaster CG5144 gene product from transcript CG5144-RA 1.0E-88 21-794 774 1
XP_005099408.1 Aplysia californica arginine kinase-like 2.0E-95 15-794 780 1
XP_002084216.1 Drosophila simulans GD14150 gene product from transcript GD14150-RA 7.0E-89 21-794 774 1

11 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS51509 PROFILE IPR022413 Phosphagen kinase N-terminal domain profile. 11.76 3-80 78 1
PF02807 PFAM IPR022413 ATP:guanido phosphotransferase, N-terminal domain 8.1E-6 9-83 75 1
SSF48034 SSF IPR022413 Guanido kinase N-terminal domain 4.97E-7 12-107 96 1
PTHR11547:SF18 PANTHER ARGININE KINASE 3.0E-138 18-791 774 1
PF00217 PFAM IPR022414 ATP:guanido phosphotransferase, C-terminal catalytic domain 5.8E-86 162-791 630 1
G3DSA:1.10.135.10 GENE3D IPR022413 Transferase Creatine Kinase, Chain A, domain 1 2.5E-5 9-86 78 1
G3DSA:3.30.590.10 GENE3D IPR014746 Creatine Kinase; Chain 1.2E-89 114-791 678 1
PS00112 PROSITE IPR022415 Phosphagen kinase active site signature. 0.0 627-644 18 1
PS51510 PROFILE IPR022414 Phosphagen kinase C-terminal domain profile. 69.212 171-794 624 1
SSF55931 SSF Glutamine synthetase/guanido kinase 6.73E-83 117-791 675 1
PTHR11547 PANTHER ARGININE OR CREATINE KINASE 3.0E-138 18-791 774 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
3-794 792 1
6-137 132 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314214 4.2E-125 3 417.9 0.9748428 18-792 775 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

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Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)