Contig : dd_Smed_v6_6707_0_3 S. mediterranea

Id  dd_Smed_v6_6707_0_3 Length  776    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

0 Blast SequenceFeatures

14 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 241-276 36 1
SSF54648 SSF DLC 5.36E-18 355-621 267 1
SSF47473 SSF EF-hand 2.49E-15 112-288 177 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 6.3E-13 367-618 252 1
PF01221 PFAM IPR001372 Dynein light chain type 1 8.1E-10 370-618 249 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 12.003 202-306 105 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 139-174 36 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 0.074 214-297 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 1.9 112-195 84 1
PF13499 PFAM IPR011992 EF-hand domain pair 5.2E-12 130-282 153 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 1.6E-38 109-621 513 1
PTHR11886:SF42 PANTHER SUBFAMILY NOT NAMED 1.6E-38 109-621 513 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 3.8E-14 103-288 186 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 8.237 100-189 90 1

2 ORFs

Contig Location Length Strand Sequence
103-630 528 1
560-685 126 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351232 1.1E-49 1 168.7 0.6701031 111-630 520 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)