Transcript : dd_Smed_v6_6707_0_3 S. mediterranea

Length  776     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

0 Blast Sequence Features

14 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 241-276 36 1
SSF54648 SSF DLC 5.36E-18 355-621 267 1
SSF47473 SSF EF-hand 2.49E-15 112-288 177 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 6.3E-13 367-618 252 1
PF01221 PFAM IPR001372 Dynein light chain type 1 8.1E-10 370-618 249 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 12.003 202-306 105 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 139-174 36 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 0.074 214-297 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 1.9 112-195 84 1
PF13499 PFAM IPR011992 EF-hand domain pair 5.2E-12 130-282 153 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 1.6E-38 109-621 513 1
PTHR11886:SF42 PANTHER SUBFAMILY NOT NAMED 1.6E-38 109-621 513 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 3.8E-14 103-288 186 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 8.237 100-189 90 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
103-630 528 1
560-685 126 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351232 1.1E-49 1 168.7 0.6701031 111-630 520 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)