Transcript : dd_Smed_v6_656_0_1 S. mediterranea

Length  1185     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY068134.1, clone H.83.2b unknown mRNA sequence
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005909.2 Homo sapiens malate dehydrogenase 2 2.0E-148 90-1073 984 1
NP_032643.2 Mus musculus malate dehydrogenase 2, NAD (mitochondrial) 1.0E-147 90-1073 984 1
XP_973533.1 Tribolium castaneum malate dehydrogenase, mitochondrial 2.0E-151 99-1067 969 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00056 PFAM IPR001236 lactate/malate dehydrogenase, NAD binding domain 5.0E-46 135-560 426 1
G3DSA:3.40.50.720 GENE3D IPR016040 NAD(P)-binding Rossmann-like Domain 1.2E-59 132-563 432 1
SSF51735 SSF NAD(P)-binding Rossmann-fold domains 4.38E-39 135-560 426 1
PTHR11540 PANTHER IPR001557 MALATE AND LACTATE DEHYDROGENASE 1.1E-183 45-1070 1026 1
PS00068 PROSITE IPR001252 Malate dehydrogenase active site signature. 0.0 564-599 36 1
PF02866 PFAM IPR022383 lactate/malate dehydrogenase, alpha/beta C-terminal domain 6.3E-43 567-1055 489 1
G3DSA:3.90.110.10 GENE3D IPR015955 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2 1.2E-64 567-1061 495 1
SSF56327 SSF IPR015955 LDH C-terminal domain-like 7.87E-44 564-1064 501 1
PTHR11540:SF16 PANTHER MALATE DEHYDROGENASE, MITOCHONDRIAL 1.1E-183 45-1070 1026 1
TIGR01772 TIGRFAMs IPR010097 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 1.8E-135 135-1061 927 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
3-1079 1077 1
2-133 132 1
542-673 132 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300834 2.7E-225 3 749.6 0.785654 129-1059 931 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)