Contig : dd_Smed_v6_656_0_1 S. mediterranea

Id  dd_Smed_v6_656_0_1 Length  1185    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005909.2 Homo sapiens malate dehydrogenase 2, NAD (mitochondrial) 2.0E-148 90-1073 984 1
NP_032643.2 Mus musculus malate dehydrogenase 2, NAD (mitochondrial) 1.0E-147 90-1073 984 1
XP_973533.1 Tribolium castaneum malate dehydrogenase, mitochondrial 2.0E-151 99-1067 969 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00056 PFAM IPR001236 lactate/malate dehydrogenase, NAD binding domain 5.0E-46 135-560 426 1
G3DSA:3.40.50.720 GENE3D IPR016040 NAD(P)-binding Rossmann-like Domain 1.2E-59 132-563 432 1
SSF51735 SSF NAD(P)-binding Rossmann-fold domains 4.38E-39 135-560 426 1
PTHR11540 PANTHER IPR001557 MALATE AND LACTATE DEHYDROGENASE 1.1E-183 45-1070 1026 1
PS00068 PROSITE IPR001252 Malate dehydrogenase active site signature. 0.0 564-599 36 1
PF02866 PFAM IPR022383 lactate/malate dehydrogenase, alpha/beta C-terminal domain 6.3E-43 567-1055 489 1
G3DSA:3.90.110.10 GENE3D IPR015955 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2 1.2E-64 567-1061 495 1
SSF56327 SSF IPR015955 LDH C-terminal domain-like 7.87E-44 564-1064 501 1
PTHR11540:SF16 PANTHER MALATE DEHYDROGENASE, MITOCHONDRIAL 1.1E-183 45-1070 1026 1
TIGR01772 TIGRFAMs IPR010097 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 1.8E-135 135-1061 927 1

3 ORFs

Contig Location Length Strand Sequence
3-1079 1077 1
2-133 132 1
542-673 132 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300834 2.7E-225 3 749.6 0.785654 129-1059 931 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)