Contig : dd_Smed_v6_650_0_1 S. mediterranea
Id  dd_Smed_v6_650_0_1 Length  958    Open in Genome Browser
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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_782492.2 Strongylocentrotus purpuratus tubulin polymerization-promoting protein family member 2-like 4.0E-19 159-671 513 1
XP_003225414.2 Anolis carolinensis tubulin polymerization-promoting protein family member 3 3.0E-14 132-671 540 1
XP_003437780.1 Oreochromis niloticus tubulin polymerization-promoting protein family member 3-like 4.0E-14 162-671 510 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF47473 SSF EF-hand 1.31E-22 147-548 402 1
PF05517 PFAM IPR008907 p25-alpha 1.3E-29 171-671 501 1
PTHR12932 PANTHER IPR008907 P25 ALPHA-RELATED 1.9E-29 150-668 519 1

3 ORFs

Contig Location Length Strand Sequence
159-674 516 1
267-473 207 -1
526-681 156 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314440 1.9E-39 3 135.0 0.5146138 180-672 493 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)