Transcript : dd_Smed_v6_650_0_1 S. mediterranea
Length  958     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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* Evidence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_782492.2 Strongylocentrotus purpuratus tubulin polymerization-promoting protein family member 2 4.0E-19 159-671 513 1
XP_003225414.2 Anolis carolinensis tubulin polymerization-promoting protein family member 3 3.0E-14 132-671 540 1
XP_003437780.1 Oreochromis niloticus tubulin polymerization-promoting protein family member 3-like 4.0E-14 162-671 510 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF47473 SSF EF-hand 1.31E-22 147-548 402 1
PF05517 PFAM IPR008907 p25-alpha 1.3E-29 171-671 501 1
PTHR12932 PANTHER IPR008907 P25 ALPHA-RELATED 1.9E-29 150-668 519 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
159-674 516 1
267-473 207 -1
526-681 156 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314440 1.9E-39 3 135.0 0.5146138 180-672 493 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)