Contig : dd_Smed_v6_650_0_1 S. mediterranea

Id  dd_Smed_v6_650_0_1 Length  958    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_782492.2 Strongylocentrotus purpuratus tubulin polymerization-promoting protein family member 2-like 4.0E-19 159-671 513 1
XP_003225414.2 Anolis carolinensis tubulin polymerization-promoting protein family member 3 3.0E-14 132-671 540 1
XP_003437780.1 Oreochromis niloticus tubulin polymerization-promoting protein family member 3-like 4.0E-14 162-671 510 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF47473 SSF EF-hand 1.31E-22 147-548 402 1
PF05517 PFAM IPR008907 p25-alpha 1.3E-29 171-671 501 1
PTHR12932 PANTHER IPR008907 P25 ALPHA-RELATED 1.9E-29 150-668 519 1

3 ORFs

Contig Location Length Strand Sequence
159-674 516 1
267-473 207 -1
526-681 156 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314440 1.9E-39 3 135.0 0.5146138 180-672 493 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)