Transcript : dd_Smed_v6_64_0_1 S. mediterranea

Length  445     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_066357.2 Homo sapiens ribosomal protein L36a 6.0E-51 73-390 318 1
NP_063918.1 Mus musculus ribosomal protein L36A 1.0E-50 73-390 318 1
XP_002161180.1 Hydra vulgaris 60S ribosomal protein L44 9.0E-59 73-390 318 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF57829 SSF IPR011332 Zn-binding ribosomal proteins 1.45E-35 76-351 276 1
PS01172 PROSITE IPR000552 Ribosomal protein L44e signature. 0.0 259-291 33 1
G3DSA:3.10.450.80 GENE3D IPR000552   1.2E-44 76-354 279 1
PTHR10369:SF3 PANTHER 60S RIBOSOMAL PROTEIN L36A 1.1E-83 67-387 321 1
PTHR10369 PANTHER IPR000552 60S RIBOSOMAL PROTEIN L36A/L44 1.1E-83 67-387 321 1
PF00935 PFAM IPR000552 Ribosomal protein L44 3.3E-34 127-351 225 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
73-390 318 1
301-444 144 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300213 2.3E-49 1 165.2 0.7033708 78-390 313 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)