Contig : dd_Smed_v6_64_0_1 S. mediterranea

Id  dd_Smed_v6_64_0_1 Length  445    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_066357.2 Homo sapiens ribosomal protein L36a 6.0E-51 73-390 318 1
NP_063918.1 Mus musculus ribosomal protein L36A 1.0E-50 73-390 318 1
XP_002161180.1 Hydra vulgaris 60S ribosomal protein L44-like 9.0E-59 73-390 318 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF57829 SSF IPR011332 Zn-binding ribosomal proteins 1.45E-35 76-351 276 1
PS01172 PROSITE IPR000552 Ribosomal protein L44e signature. 0.0 259-291 33 1
G3DSA:3.10.450.80 GENE3D IPR000552   1.2E-44 76-354 279 1
PTHR10369:SF3 PANTHER 60S RIBOSOMAL PROTEIN L36A 1.1E-83 67-387 321 1
PTHR10369 PANTHER IPR000552 60S RIBOSOMAL PROTEIN L36A/L44 1.1E-83 67-387 321 1
PF00935 PFAM IPR000552 Ribosomal protein L44 3.3E-34 127-351 225 1

2 ORFs

Contig Location Length Strand Sequence
73-390 318 1
301-444 144 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300213 2.3E-49 1 165.2 0.7033708 78-390 313 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)