Contig : dd_Smed_v6_648_0_1 S. mediterranea

Id  dd_Smed_v6_648_0_1 Length  1620    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_033472.1 Mus musculus tubulin, alpha 3A 0.0 58-1377 1320 1
NP_956985.1 Danio rerio tubulin, alpha 8 like 2 0.0 58-1374 1317 1
NP_989129.1 Xenopus (Silurana) tropicalis tubulin, alpha 1a 0.0 58-1377 1320 1

34 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF55307 SSF IPR008280 Tubulin C-terminal domain-like 1.22E-85 793-1362 570 1
SM00864 SMART IPR003008 Tubulin/FtsZ family, GTPase domain 1.4E-77 202-792 591 1
SM00865 SMART IPR018316 Tubulin/FtsZ family, C-terminal domain 4.4E-57 799-1233 435 1
PF00091 PFAM IPR003008 Tubulin/FtsZ family, GTPase domain 5.6E-69 64-729 666 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 1096-1134 39 1
G3DSA:3.40.50.1440 GENE3D IPR003008   1.0E-127 58-858 801 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 190-228 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 1321-1368 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 109-153 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 697-732 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 415-438 24 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 499-534 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 1018-1080 63 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 538-570 33 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 1135-1191 57 1
G3DSA:1.10.287.600 GENE3D IPR023123 Helix hairpin bin 2.5E-29 1207-1371 165 1
G3DSA:3.30.1330.20 GENE3D IPR018316   2.9E-55 865-1203 339 1
PF03953 PFAM IPR018316 Tubulin C-terminal domain 7.2E-51 844-1233 390 1
SSF52490 SSF IPR003008 Tubulin nucleotide-binding domain-like 2.49E-96 58-786 729 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 1210-1257 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 319-357 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 877-921 45 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 85-144 60 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 631-690 60 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 379-450 72 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 457-510 54 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 589-627 39 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 214-270 57 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 1195-1278 84 1
PTHR11588 PANTHER IPR000217 TUBULIN 0.0 58-1398 1341 1

6 ORFs

Contig Location Length Strand Sequence
58-1401 1344 1
1012-1236 225 -1
1173-1295 123 -1
155-265 111 1
764-871 108 -1
960-1061 102 -1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330882 7.0E-77 1 258.4 0.80617285 60-1365 1306 1
TF300477 2.6E-76 1 256.2 0.80246913 63-1362 1300 1
TF329833 5.9E-28 1 96.1 0.42098767 69-750 682 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)