Transcript : dd_Smed_v6_648_0_1 S. mediterranea
Length  1620     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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* Evidence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_033472.1 Mus musculus tubulin, alpha 3A 0.0 58-1377 1320 1
NP_956985.1 Danio rerio tubulin, alpha 8 like 2 0.0 58-1374 1317 1
NP_989129.1 Xenopus tropicalis tubulin alpha 1a 0.0 58-1377 1320 1

34 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF55307 SSF IPR008280 Tubulin C-terminal domain-like 1.22E-85 793-1362 570 1
SM00864 SMART IPR003008 Tubulin/FtsZ family, GTPase domain 1.4E-77 202-792 591 1
SM00865 SMART IPR018316 Tubulin/FtsZ family, C-terminal domain 4.4E-57 799-1233 435 1
PF00091 PFAM IPR003008 Tubulin/FtsZ family, GTPase domain 5.6E-69 64-729 666 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 1096-1134 39 1
G3DSA:3.40.50.1440 GENE3D IPR003008   1.0E-127 58-858 801 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 190-228 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 1321-1368 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 109-153 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 697-732 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 415-438 24 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 499-534 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 1018-1080 63 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 538-570 33 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 1135-1191 57 1
G3DSA:1.10.287.600 GENE3D IPR023123 Helix hairpin bin 2.5E-29 1207-1371 165 1
G3DSA:3.30.1330.20 GENE3D IPR018316   2.9E-55 865-1203 339 1
PF03953 PFAM IPR018316 Tubulin C-terminal domain 7.2E-51 844-1233 390 1
SSF52490 SSF IPR003008 Tubulin nucleotide-binding domain-like 2.49E-96 58-786 729 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 1210-1257 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 319-357 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.9E-107 877-921 45 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 85-144 60 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 631-690 60 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 379-450 72 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 457-510 54 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 589-627 39 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 214-270 57 1
PR01161 PRINTS IPR000217 Tubulin signature 3.3E-88 1195-1278 84 1
PTHR11588 PANTHER IPR000217 TUBULIN 0.0 58-1398 1341 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
58-1401 1344 1
1012-1236 225 -1
1173-1295 123 -1
155-265 111 1
764-871 108 -1
960-1061 102 -1

3 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330882 7.0E-77 1 258.4 0.80617285 60-1365 1306 1
TF300477 2.6E-76 1 256.2 0.80246913 63-1362 1300 1
TF329833 5.9E-28 1 96.1 0.42098767 69-750 682 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)