Transcript : dd_Smed_v6_646_0_1 S. mediterranea

Length  1373     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_511123.2 Drosophila melanogaster Glutamine synthetase 2 1.0E-179 183-1253 1071 1
NP_032157.2 Mus musculus glutamate-ammonia ligase (glutamine synthetase) 1.0E-176 189-1253 1065 1
NP_002056.2 Homo sapiens glutamate-ammonia ligase 4.0E-176 189-1253 1065 1

9 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00181 PROSITE IPR027303 Glutamine synthetase putative ATP-binding region signature. 0.0 885-932 48 1
PTHR20852 PANTHER GLUTAMINE SYNTHETASE 4.5E-215 189-1250 1062 1
G3DSA:3.30.590.10 GENE3D IPR014746 Creatine Kinase; Chain 4.0E-61 504-1232 729 1
PS00180 PROSITE IPR027302 Glutamine synthetase signature 1. 0.0 348-398 51 1
PF00120 PFAM IPR008146 Glutamine synthetase, catalytic domain 2.5E-62 498-1232 735 1
PTHR20852:SF43 PANTHER GLUTAMINE SYNTHETASE 4.5E-215 189-1250 1062 1
PF03951 PFAM IPR008147 Glutamine synthetase, beta-Grasp domain 1.8E-19 240-470 231 1
SSF55931 SSF Glutamine synthetase/guanido kinase 9.81E-74 498-1241 744 1
SSF54368 SSF IPR008147 Glutamine synthetase, N-terminal domain 1.01E-19 213-488 276 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

11 ORFs

Contig Location Length Strand Sequence
165-1253 1089 1
265-522 258 1
472-711 240 -1
201-404 204 -1
513-701 189 -1
840-1016 177 -1
1093-1245 153 1
2-151 150 1
1240-1371 132 -1
745-867 123 1
1084-1194 111 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300491 2.8E-275 3 914.6 0.76766205 192-1245 1054 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)