Contig : dd_Smed_v6_6388_0_1 S. mediterranea

Id  dd_Smed_v6_6388_0_1 Length  3307    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001393.1 Homo sapiens eukaryotic translation elongation factor 1 alpha 1 0.0 1947-3290 1344 -1
NP_571338.1 Danio rerio eukaryotic translation elongation factor 1 alpha 1, like 1 0.0 1950-3290 1341 -1
NP_787032.1 Rattus norvegicus eukaryotic translation elongation factor 1 alpha 1 0.0 1947-3290 1344 -1

27 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00070 PROSITE IPR016160 Aldehyde dehydrogenases cysteine active site. 0.0 1129-1161 33 1
TIGR01236 TIGRFAMs IPR005931 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase 1.9E-216 208-1788 1581 1
SSF53720 SSF IPR016161 ALDH-like 8.51E-116 199-1752 1554 1
PTHR11699 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1.1E-248 193-1791 1599 1
G3DSA:3.40.309.10 GENE3D IPR016163 Aldehyde Dehydrogenase; Chain A, domain 2 2.8E-50 1087-1665 579 1
G3DSA:3.40.605.10 GENE3D IPR016162 Aldehyde Dehydrogenase; Chain A, domain 1 7.1E-56 295-1083 789 1
PF00171 PFAM IPR015590 Aldehyde dehydrogenase family 1.1E-99 343-1743 1401 1
PS00687 PROSITE IPR029510 Aldehyde dehydrogenases glutamic acid active site. 0.0 1045-1065 21 1
PTHR11699:SF18 PANTHER DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, MIT 1.1E-248 193-1791 1599 1
TIGR00483 TIGRFAMs IPR004539 EF-1_alpha: translation elongation factor EF-1, subunit alpha 2.2E-216 1953-3299 1347 -1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 4.3E-24 2958-2990 33 -1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 4.3E-24 3075-3098 24 -1
PS00301 PROSITE IPR000795 GTP-binding elongation factors signature. 0.0 3075-3119 45 -1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 6.2E-86 2640-3287 648 -1
PTHR23115 PANTHER TRANSLATION FACTOR 0.0 1920-3299 1380 -1
PF00009 PFAM IPR000795 Elongation factor Tu GTP binding domain 1.0E-53 2586-3287 702 -1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 4.3E-24 2832-2858 27 -1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 1.05E-75 2502-3287 786 -1
PF03144 PFAM IPR004161 Elongation factor Tu domain 2 7.5E-17 2307-2504 198 -1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 4.3E-24 3009-3038 30 -1
G3DSA:2.40.30.10 GENE3D Translation factors 2.3E-53 1959-2231 273 -1
PTHR23115:SF109 PANTHER SUBFAMILY NOT NAMED 0.0 1920-3299 1380 -1
SSF50465 SSF IPR009001 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 9.35E-44 1962-2267 306 -1
PF03143 PFAM IPR004160 Elongation factor Tu C-terminal domain 4.5E-35 1962-2270 309 -1
SSF50447 SSF IPR009000 Translation proteins 1.68E-29 2283-2555 273 -1
G3DSA:2.40.30.10 GENE3D Translation factors 6.2E-48 2235-2561 327 -1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 4.3E-24 3237-3275 39 -1

14 ORFs

Contig Location Length Strand Sequence
118-1794 1677 1
1908-3299 1392 -1
3015-3305 291 1
1969-2220 252 1
686-925 240 1
2323-2529 207 1
78-281 204 -1
2578-2769 192 1
1625-1813 189 -1
1562-1720 159 1
2190-2333 144 1
846-986 141 -1
1080-1187 108 -1
2614-2715 102 -1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300481 0.0 1 1141.5 0.4811007 204-1794 1591 1
TF300388 2.7E-42 1 144.8 0.42757785 369-1782 1414 1
TF105833 3.1E-131 6 439.4 0.4024796 1957-3289 1333 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)