Contig : dd_Smed_v6_636_0_1 S. mediterranea

Id  dd_Smed_v6_636_0_1 Length  11557    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_995670.2 Drosophila melanogaster Apolipoprotein lipid transfer particle 2.0E-36 75-2159 2085 1
XP_005105854.1 Aplysia californica apolipophorins-like 8.0E-76 138-2858 2721 1
XP_006820902.1 Saccoglossus kowalevskii apolipophorins-like 8.0E-65 84-2819 2736 1

14 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF09172 PFAM IPR015255 Domain of unknown function (DUF1943) 7.5E-18 1950-2591 642 1
G3DSA:2.30.230.10 GENE3D IPR015816 Lipovitellin; beta-sheet shell regions, chain A 9.3E-43 180-929 750 1
PS51211 PROFILE IPR001747 Vitellogenin domain profile. 18.38 183-2048 1866 1
SSF56968 SSF IPR015819 Lipovitellin-phosvitin complex; beta-sheet shell regions 4.32E-34 183-917 735 1
SM00638 SMART IPR001747 Lipoprotein N-terminal Domain 3.2E-10 183-1838 1656 1
SM00216 SMART IPR001846 von Willebrand factor (vWF) type D domain 0.0016 9837-10310 474 1
PF00094 PFAM IPR001846 von Willebrand factor type D domain 1.2E-8 9876-10310 435 1
PS51233 PROFILE IPR001846 VWFD domain profile. 26.252 9864-10481 618 1
G3DSA:1.25.10.20 GENE3D IPR011030 Lipovitellin. Chain A, domain 2 4.6E-41 960-1913 954 1
SSF48431 SSF IPR011030 Lipovitellin-phosvitin complex, superhelical domain 4.32E-33 1011-1907 897 1
PF01347 PFAM IPR001747 Lipoprotein amino terminal region 1.2E-59 183-1835 1653 1
SSF56968 SSF IPR015819 Lipovitellin-phosvitin complex; beta-sheet shell regions 1.02E-17 1953-2717 765 1
PTHR23345 PANTHER VITELLOGENIN-RELATED 2.8E-72 183-10748 10566 1
G3DSA:2.20.50.20 GENE3D IPR015817 Lipovitellin. Chain A, domain 3 1.7E-12 1950-2273 324 1

22 ORFs

Contig Location Length Strand Sequence
3-11480 11478 1
9812-10138 327 -1
2651-2881 231 -1
10032-10244 213 -1
5069-5263 195 -1
4736-4915 180 -1
11152-11316 165 -1
6122-6283 162 -1
11198-11356 159 -1
1432-1584 153 -1
6630-6779 150 -1
9808-9942 135 -1
1612-1740 129 1
2059-2187 129 1
209-337 129 -1
2333-2449 117 -1
4678-4788 111 -1
3074-3184 111 -1
7615-7722 108 -1
4283-4387 105 -1
123-227 105 -1
5860-5961 102 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)