Contig : dd_Smed_v6_62_0_1 S. mediterranea

Id  dd_Smed_v6_62_0_1 Length  815    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_001469754.1 Leishmania infantum JPCM5 putative universal minicircle sequence binding protein (UMSBP) 9.0E-31 92-610 519 1
XP_001686738.1 Leishmania major strain Friedlin putative universal minicircle sequence binding protein 5.0E-30 92-610 519 1
XP_003874510.1 Leishmania mexicana MHOM/GT/2001/U1103 putative universal minicircle sequence binding protein (UMSBP) 9.0E-29 92-610 519 1

25 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:4.10.60.10 GENE3D IPR001878 HIV-1 Nucleocapsid Protein 3.7E-14 491-607 117 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 10.559 335-379 45 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 11.252 413-457 45 1
SSF57756 SSF IPR001878 Retrovirus zinc finger-like domains 3.72E-13 305-460 156 1
SM00343 SMART IPR001878 zinc finger 1.7E-4 332-379 48 1
SM00343 SMART IPR001878 zinc finger 5.7E-6 203-250 48 1
PF00098 PFAM IPR001878 Zinc knuckle 3.5E-8 494-541 48 1
PF00098 PFAM IPR001878 Zinc knuckle 6.7E-7 332-379 48 1
PF00098 PFAM IPR001878 Zinc knuckle 3.6E-8 119-166 48 1
SSF57756 SSF IPR001878 Retrovirus zinc finger-like domains 3.66E-13 470-604 135 1
SM00343 SMART IPR001878 zinc finger 2.1E-5 494-541 48 1
SM00343 SMART IPR001878 zinc finger 1.6E-5 119-166 48 1
SM00343 SMART IPR001878 zinc finger 8.3E-5 410-457 48 1
PF00098 PFAM IPR001878 Zinc knuckle 2.8E-7 410-454 45 1
G3DSA:4.10.60.10 GENE3D IPR001878 HIV-1 Nucleocapsid Protein 9.5E-17 98-250 153 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 10.905 494-541 48 1
SSF57756 SSF IPR001878 Retrovirus zinc finger-like domains 2.44E-13 107-256 150 1
SM00343 SMART IPR001878 zinc finger 5.3E-4 560-607 48 1
PF00098 PFAM IPR001878 Zinc knuckle 1.2E-6 557-601 45 1
PTHR23002 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 1.1E-43 101-607 507 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 11.285 122-166 45 1
PF00098 PFAM IPR001878 Zinc knuckle 3.6E-8 203-250 48 1
G3DSA:4.10.60.10 GENE3D IPR001878 HIV-1 Nucleocapsid Protein 2.5E-15 311-457 147 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 11.416 206-250 45 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 10.197 560-607 48 1

4 ORFs

Contig Location Length Strand Sequence
101-610 510 1
141-620 480 1
200-589 390 -1
495-635 141 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF316974 3.9E-44 2 151.3 0.5018405 198-606 409 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)