Contig : dd_Smed_v6_613_0_1 S. mediterranea

Id  dd_Smed_v6_613_0_1 Length  753    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080832.1 Mus musculus dynein light chain LC8-type 2 4.0E-52 341-607 267 1
NP_525075.1 Drosophila melanogaster cut up 9.0E-51 341-607 267 1
XP_001363123.2 Monodelphis domestica dynein, light chain, LC8-type 2 3.0E-54 302-607 306 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 5.1E-66 314-604 291 1
PTHR11886:SF33 PANTHER DYNEIN LIGHT CHAIN 1, CYTOPLASMIC 5.1E-66 314-604 291 1
PF01221 PFAM IPR001372 Dynein light chain type 1 5.5E-44 341-604 264 1
SSF54648 SSF DLC 5.36E-42 335-604 270 1
PS01239 PROSITE IPR019763 Dynein light chain type 1 signature. 0.0 503-544 42 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 7.3E-46 341-604 264 1

6 ORFs

Contig Location Length Strand Sequence
239-556 318 -1
341-607 267 1
72-230 159 1
504-656 153 1
2-112 111 1
1-105 105 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)