Transcript : dd_Smed_v6_613_0_1 S. mediterranea

Length  753     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080832.1 Mus musculus dynein light chain LC8-type 2 4.0E-52 341-607 267 1
NP_525075.1 Drosophila melanogaster cut up 9.0E-51 341-607 267 1
XP_001363123.2 Monodelphis domestica dynein, light chain, LC8-type 2 3.0E-54 302-607 306 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 5.1E-66 314-604 291 1
PTHR11886:SF33 PANTHER DYNEIN LIGHT CHAIN 1, CYTOPLASMIC 5.1E-66 314-604 291 1
PF01221 PFAM IPR001372 Dynein light chain type 1 5.5E-44 341-604 264 1
SSF54648 SSF DLC 5.36E-42 335-604 270 1
PS01239 PROSITE IPR019763 Dynein light chain type 1 signature. 0.0 503-544 42 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 7.3E-46 341-604 264 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
239-556 318 -1
341-607 267 1
72-230 159 1
504-656 153 1
2-112 111 1
1-105 105 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)