Contig : dd_Smed_v6_602_0_1 S. mediterranea

Id  dd_Smed_v6_602_0_1 Length  685    Open in Genome Browser

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Planmine Rnai Result Displayer

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Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006423.1 Homo sapiens Niemann-Pick disease, type C2 1.0E-29 180-584 405 1
NP_075898.1 Mus musculus Niemann-Pick type C2 4.0E-27 207-584 378 1
XP_002741349.1 Saccoglossus kowalevskii epididymal secretory protein E1-like 2.0E-36 132-584 453 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11306 PANTHER NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED 1.4E-43 126-578 453 1
SM00737 SMART IPR003172 Domain involved in innate immunity and lipid metabolism. 5.0E-36 210-575 366 1
PF02221 PFAM IPR003172 ML domain 1.1E-29 204-581 378 1
PTHR11306:SF0 PANTHER EPIDIDYMAL SECRETORY PROTEIN E1 1.4E-43 126-578 453 1
SSF81296 SSF IPR014756 E set domains 6.2E-36 201-581 381 1
G3DSA:2.60.40.770 GENE3D IPR003172   6.7E-40 204-581 378 1

1 ORFs

Contig Location Length Strand Sequence
132-587 456 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF317963 1.2E-50 3 172.1 0.55328465 204-582 379 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)