Transcript : dd_Smed_v6_602_0_1 S. mediterranea

Length  685     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006423.1 Homo sapiens NPC intracellular cholesterol transporter 2 1.0E-29 180-584 405 1
NP_075898.1 Mus musculus Niemann-Pick type C2 4.0E-27 207-584 378 1
XP_002741349.1 Saccoglossus kowalevskii epididymal secretory protein E1-like 2.0E-36 132-584 453 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11306 PANTHER NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED 1.4E-43 126-578 453 1
SM00737 SMART IPR003172 Domain involved in innate immunity and lipid metabolism. 5.0E-36 210-575 366 1
PF02221 PFAM IPR003172 ML domain 1.1E-29 204-581 378 1
PTHR11306:SF0 PANTHER EPIDIDYMAL SECRETORY PROTEIN E1 1.4E-43 126-578 453 1
SSF81296 SSF IPR014756 E set domains 6.2E-36 201-581 381 1
G3DSA:2.60.40.770 GENE3D IPR003172   6.7E-40 204-581 378 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
132-587 456 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF317963 1.2E-50 3 172.1 0.55328465 204-582 379 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)