Transcript : dd_Smed_v6_601_0_1 S. mediterranea

Length  827     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: KC916779.1, clone PL04013A1A11 histone H1 mRNA - partial cds
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001027290.1 Drosophila melanogaster CG33807 gene product from transcript CG33807-RA 3.0E-14 122-352 231 1
XP_001649023.1 Aedes aegypti AAEL014560-PA 4.0E-17 122-358 237 1
NP_999720.1 Strongylocentrotus purpuratus late histone H1-gamma 9.0E-17 125-367 243 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00538 PFAM IPR005818 linker histone H1 and H5 family 1.4E-22 128-352 225 1
G3DSA:1.10.10.10 GENE3D IPR011991 winged helixrepressor DNA binding domain 4.2E-26 116-373 258 1
PR00624 PRINTS IPR005819 Histone H5 signature 9.48E-7 575-631 57 1
SM00526 SMART IPR005818 Domain in histone families 1 and 5 2.5E-23 122-319 198 1
SSF46785 SSF Winged helixDNA-binding domain 1.96E-20 119-376 258 1
PTHR11467 PANTHER HISTONE H1/H5 3.6E-26 44-709 666 1
PS51504 PROFILE IPR005818 Linker histone H1/H5 globular (H15) domain profile. 26.981 128-355 228 1
PR00624 PRINTS IPR005819 Histone H5 signature 9.48E-7 302-373 72 1
PR00624 PRINTS IPR005819 Histone H5 signature 9.48E-7 401-442 42 1
PR00624 PRINTS IPR005819 Histone H5 signature 9.48E-7 89-151 63 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
47-715 669 1
283-825 543 -1
401-628 228 -1
621-728 108 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)