Contig : dd_Smed_v6_600_0_1 S. mediterranea

Id  dd_Smed_v6_600_0_1 Length  835    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_727447.1 Drosophila melanogaster Autophagy-specific gene 8a 2.0E-65 71-418 348 1
NP_009209.1 Homo sapiens GABA(A) receptor-associated protein 4.0E-65 71-418 348 1
NP_065615.1 Mus musculus gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1 1.0E-62 71-418 348 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 8.3E-55 59-415 357 1
PTHR10969:SF23 PANTHER AUTOPHAGY-SPECIFIC GENE 8A-RELATED 5.6E-88 50-418 369 1
PF02991 PFAM IPR004241 Autophagy protein Atg8 ubiquitin like 4.5E-49 107-415 309 1
PTHR10969 PANTHER IPR004241 MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 5.6E-88 50-418 369 1
SSF54236 SSF IPR029071 Ubiquitin-like 3.1E-43 71-415 345 1

3 ORFs

Contig Location Length Strand Sequence
71-421 351 1
291-425 135 1
339-446 108 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314556 1.7E-83 2 279.0 0.41796407 72-420 349 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)