Transcript : dd_Smed_v6_600_0_1 S. mediterranea

Length  835     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067174.1, clone H.111.10f unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_727447.1 Drosophila melanogaster Autophagy-specific gene 8a 2.0E-65 71-418 348 1
NP_009209.1 Homo sapiens GABA type A receptor-associated protein 4.0E-65 71-418 348 1
NP_065615.1 Mus musculus gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1 1.0E-62 71-418 348 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 8.3E-55 59-415 357 1
PTHR10969:SF23 PANTHER AUTOPHAGY-SPECIFIC GENE 8A-RELATED 5.6E-88 50-418 369 1
PF02991 PFAM IPR004241 Autophagy protein Atg8 ubiquitin like 4.5E-49 107-415 309 1
PTHR10969 PANTHER IPR004241 MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 5.6E-88 50-418 369 1
SSF54236 SSF IPR029071 Ubiquitin-like 3.1E-43 71-415 345 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
71-421 351 1
291-425 135 1
339-446 108 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314556 1.7E-83 2 279.0 0.41796407 72-420 349 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)