Transcript : dd_Smed_v6_591_0_1 S. mediterranea

Length  1551     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY068125.1, clone H.63.3c unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524515.2 Drosophila melanogaster Aldolase 2.0E-155 1-990 990 1
NP_031464.1 Mus musculus aldolase A, fructose-bisphosphate 2.0E-152 1-990 990 1
NP_001171728.1 Saccoglossus kowalevskii fructose-bisphosphate aldolase 7.0E-170 1-990 990 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00274 PFAM IPR000741 Fructose-bisphosphate aldolase class-I 1.3E-159 1-987 987 1
SSF51569 SSF Aldolase 1.15E-138 1-987 987 1
G3DSA:3.20.20.70 GENE3D IPR013785 Aldolase class I 7.6E-160 1-936 936 1
PS00158 PROSITE IPR000741 Fructose-bisphosphate aldolase class-I active site. 0.0 565-594 30 1
PTHR11627 PANTHER IPR000741 FRUCTOSE-BISPHOSPHATE ALDOLASE 2.3E-244 13-987 975 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
1-990 990 1
886-1050 165 -1
1360-1506 147 1
392-535 144 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314203 1.2E-201 1 669.9 0.63700837 3-990 988 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)