Contig : dd_Smed_v6_591_0_1 S. mediterranea

Id  dd_Smed_v6_591_0_1 Length  1551    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524515.2 Drosophila melanogaster Aldolase 2.0E-155 1-990 990 1
NP_031464.1 Mus musculus aldolase A, fructose-bisphosphate 2.0E-152 1-990 990 1
NP_001171728.1 Saccoglossus kowalevskii fructose-bisphosphate aldolase 7.0E-170 1-990 990 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00274 PFAM IPR000741 Fructose-bisphosphate aldolase class-I 1.3E-159 1-987 987 1
SSF51569 SSF Aldolase 1.15E-138 1-987 987 1
G3DSA:3.20.20.70 GENE3D IPR013785 Aldolase class I 7.6E-160 1-936 936 1
PS00158 PROSITE IPR000741 Fructose-bisphosphate aldolase class-I active site. 0.0 565-594 30 1
PTHR11627 PANTHER IPR000741 FRUCTOSE-BISPHOSPHATE ALDOLASE 2.3E-244 13-987 975 1

4 ORFs

Contig Location Length Strand Sequence
1-990 990 1
886-1050 165 -1
1360-1506 147 1
392-535 144 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314203 1.2E-201 1 669.9 0.63700837 3-990 988 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)