Contig : dd_Smed_v6_5915_0_1 S. mediterranea

Id  dd_Smed_v6_5915_0_1 Length  6610    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_919224.1 Homo sapiens otoferlin 0.0 115-3825 3711 1
NP_114081.2 Mus musculus otoferlin 0.0 115-3825 3711 1
XP_849758.1 Canis lupus familiaris otoferlin 0.0 115-3825 3711 1

32 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00168 PFAM IPR000008 C2 domain 3.4E-4 766-912 147 1
PF00168 PFAM IPR000008 C2 domain 3.7 5935-6015 81 1
PF00168 PFAM IPR000008 C2 domain 8.9E-8 2866-3156 291 1
PF00168 PFAM IPR000008 C2 domain 1.7E-15 4963-5205 243 1
PF00168 PFAM IPR000008 C2 domain 1.4 160-351 192 1
PF00168 PFAM IPR000008 C2 domain 2.8E-15 1288-1560 273 1
PS50004 PROFILE IPR000008 C2 domain profile. 12.528 4960-5208 249 1
G3DSA:2.60.40.150 GENE3D IPR000008 C2- domain Calcium/lipid binding domain 1.0E-6 130-456 327 1
G3DSA:2.60.40.150 GENE3D IPR000008 C2- domain Calcium/lipid binding domain 5.6E-12 745-1140 396 1
PF08150 PFAM IPR012561 FerB (NUC096) domain 1.7E-21 2521-2748 228 1
SSF49562 SSF IPR000008 C2 domain (Calcium/lipid-binding domain, CaLB) 1.21E-22 1273-1656 384 1
PS50004 PROFILE IPR000008 C2 domain profile. 8.695 760-1020 261 1
SSF49562 SSF IPR000008 C2 domain (Calcium/lipid-binding domain, CaLB) 2.49E-9 130-456 327 1
G3DSA:2.60.40.150 GENE3D IPR000008 C2- domain Calcium/lipid binding domain 1.1E-33 5539-5610 72 1
G3DSA:2.60.40.150 GENE3D IPR000008 C2- domain Calcium/lipid binding domain 9.0E-24 1264-1656 393 1
G3DSA:2.60.40.150 GENE3D IPR000008 C2- domain Calcium/lipid binding domain 1.1E-33 4924-5265 342 1
G3DSA:2.60.40.150 GENE3D IPR000008 C2- domain Calcium/lipid binding domain 1.0E-17 2824-3276 453 1
G3DSA:2.60.40.150 GENE3D IPR000008 C2- domain Calcium/lipid binding domain 7.1E-16 5629-6222 594 1
SSF49562 SSF IPR000008 C2 domain (Calcium/lipid-binding domain, CaLB) 2.23E-15 2854-3276 423 1
SM00239 SMART IPR000008 Protein kinase C conserved region 2 (CalB) 4.2E-17 1282-1614 333 1
SM00239 SMART IPR000008 Protein kinase C conserved region 2 (CalB) 4.1E-7 2863-3210 348 1
SM00239 SMART IPR000008 Protein kinase C conserved region 2 (CalB) 8.1E-11 4957-5253 297 1
SM00239 SMART IPR000008 Protein kinase C conserved region 2 (CalB) 6.8E-6 760-1065 306 1
SM00239 SMART IPR000008 Protein kinase C conserved region 2 (CalB) 0.43 118-399 282 1
SM00239 SMART IPR000008 Protein kinase C conserved region 2 (CalB) 0.023 5677-6066 390 1
PS50004 PROFILE IPR000008 C2 domain profile. 10.782 2821-3159 339 1
PF08151 PFAM IPR012968 FerI (NUC094) domain 8.4E-24 1024-1248 225 1
SSF49562 SSF IPR000008 C2 domain (Calcium/lipid-binding domain, CaLB) 1.93E-23 4939-5241 303 1
PS50004 PROFILE IPR000008 C2 domain profile. 12.958 1282-1590 309 1
PTHR12546 PANTHER FER-1-LIKE 0.0 139-6474 6336 1

14 ORFs

Contig Location Length Strand Sequence
115-6477 6363 1
5415-5651 237 -1
3065-3268 204 -1
4454-4633 180 1
6222-6386 165 -1
1009-1173 165 -1
5092-5244 153 -1
674-817 144 1
4719-4862 144 -1
1969-2103 135 -1
2660-2788 129 -1
1028-1138 111 1
1622-1732 111 -1
3520-3627 108 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF316871 0.0 1 1280.3 0.5779123 747-4566 3820 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)